Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: SHRSP.SHRSR-(Klk1-D1Mit3)/Bbb

Symbol: SHRSP.SHRSR-(Klk1-D1Mit3)/Bbb
Strain: SHRSP.SHRSR-(Klk1-D1Mit3)
Substrain: Bbb
RGD ID: 2307167
Citation ID: RRID:RGD_2307167
Ontology ID: RS:0002536
Also Known As: SHRsp.SHRsr-(Klk-D1Mit3); SHRSP.SHRSR-(Klk1-D1Mit3)/Bbb; MDC-03-15; SHRsp.SHRsr-(Klk-D1Mit3)/Bbb; Stroke congenic IIE; SHRSP.SHRSR-(Klk1-D1Mit3)/Bbb
Type: congenic
Available Source: Not Available
Origination: Max-Delbruck-Center for Molecular Medicine, Berlin, Germany
Description: SHRSP were crossed with SHRSR to give heterozygous F2 animals, these were backcrossed and heterozygotes with desired segment of interest selected and backcrossed to fix the allele of interest
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2194,378,103 - 144,267,916RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0199,298,965 - 156,446,783RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01100,371,040 - 162,692,800RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4194,355,758 - 146,971,983RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View
proteinuria  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Reciprocal congenic lines for a major stroke QTL on rat chromosome 1. Rubattu S, etal., Physiol Genomics. 2006 Oct 11;27(2):108-13. Epub 2006 Jul 11.
3. SNP and haplotype mapping for genetic analysis in the rat. Saar K, etal., Nat Genet. 2008 May;40(5):560-6.

Region

Position Markers

Flank 2 / 1 (D1Mit3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,267,353 - 144,267,490 (-)MAPPER
mRatBN7.21144,267,353 - 144,267,916 (-)MAPPER
Rnor_6.01156,446,647 - 156,446,783NCBI
Rnor_6.01156,446,196 - 156,446,783NCBI
Rnor_5.01162,692,213 - 162,692,800UniSTS
Rnor_5.01162,692,664 - 162,692,800UniSTS
RGSC_v3.41146,971,846 - 146,971,983RGD
RGSC_v3.41146,971,847 - 146,971,983UniSTS
RGSC_v3.11147,050,253 - 147,050,389RGD
Celera1142,487,594 - 142,487,730UniSTS
RH 3.4 Map11128.0UniSTS
RH 3.4 Map11128.0RGD
RH 2.0 Map1740.1RGD
SHRSP x BN Map175.6399RGD
FHH x ACI Map167.73RGD
Cytogenetic Map1 RGD

Flank 1 / 1 (Klk1c12)
Rat AssemblyChrPosition (strand)Source
GRCr81103,514,639 - 103,518,676 (-)NCBI
mRatBN7.2194,378,103 - 94,382,140 (-)NCBI
mRatBN7.2 Ensembl194,378,054 - 94,382,176 (-)Ensembl
UTH_Rnor_SHR_Utx199,763,522 - 99,767,559 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01108,236,147 - 108,240,184 (-)NCBI
UTH_Rnor_WKY_Bbb_1.01101,526,623 - 101,530,654 (-)NCBI
Rnor_6.0199,298,965 - 99,303,048 (-)NCBI
Rnor_6.0 Ensembl199,299,011 - 99,303,048 (-)Ensembl
Rnor_5.01100,371,040 - 100,375,077 (-)NCBI
RGSC_v3.4194,355,758 - 94,359,795 (-)NCBI
RGSC_v3.1194,433,868 - 94,437,906 (-)NCBI
Celera188,645,697 - 88,649,734 (-)NCBI
Cytogenetic Map1q22NCBI

Additional Information