Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: SHRSP.WKY-(D1Mgh5-D1Wox29)/Izm

Symbol: SHRSP.WKY-(D1Mgh5-D1Wox29)/Izm
Strain: SHRSP.WKY-(D1Mgh5-D1Wox29)
Substrain: Izm
RGD ID: 2302108
Citation ID: RRID:RGD_2302108
Ontology ID: RS:0001681
Also Known As: SHRSPwch1.11;SHRSP.WKY-(D1Mgh5-D1Wox29)/Izm;NBRP Rat No: 0232; SHRSP.WKY-(D1Mgh5-D1Wox29)/Izm
Type: congenic
Available Source: National BioResource Project for the Rat in Japan
Origination: National BioResource Project for the Rat in Japan
Description: SHRSP.WKY-(Klk1-D1Rat116)/Izm was backcrossed with SHRSP/Izm, resulting F1 were intercrossed to obtain F2 recombinant individuals were selected by marker assisted selection
Last Known Status: Cryopreserved Embryo
Research Usage Cardio Hypertension
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2178,430,536 - 123,350,581RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0179,689,548 - 130,779,320RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0180,946,174 - 131,822,376RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4178,134,304 - 124,614,852RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Genetic effects of blood pressure quantitative trait Loci on hypertension-related organ damage: evaluation using multiple congenic strains. Ishikawa N, etal., Hypertens Res. 2008 Sep;31(9):1773-9.
2. Strains registered by the National Bio Resource Project for the Rat in Japan Personal Communication with NBRP
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D1Mgh5)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2178,430,536 - 78,430,678 (+)MAPPER
Rnor_6.0179,689,548 - 79,689,689NCBI
Rnor_5.0180,946,174 - 80,946,315UniSTS
RGSC_v3.4178,134,305 - 78,134,446UniSTS
RGSC_v3.4178,134,304 - 78,134,446RGD
RGSC_v3.1178,212,415 - 78,212,557RGD
Celera172,898,184 - 72,898,325UniSTS
RH 3.4 Map1791.5UniSTS
RH 3.4 Map1791.5RGD
RH 2.0 Map1501.0RGD
SHRSP x BN Map140.2499RGD
FHH x ACI Map140.1RGD
Cytogenetic Map1q21UniSTS

Flank 2 / 1 (D1Wox29)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21123,350,408 - 123,350,581 (+)MAPPER
Rnor_6.01130,779,148 - 130,779,320NCBI
Rnor_5.01131,822,204 - 131,822,376UniSTS
RGSC_v3.41124,614,679 - 124,614,852RGD
RGSC_v3.41124,614,680 - 124,614,852UniSTS
RGSC_v3.11124,693,023 - 124,693,195RGD
Celera1115,524,239 - 115,524,411UniSTS
RH 3.4 Map11458.6RGD
RH 3.4 Map11458.6UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_life_disease Had higher stroke latency 2302104
strain_reproduction Good breeding performance. 1302502

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-05-11 SHRSP.WKY-(D1Mgh5-D1Wox29)/Izm    SHRSP.WKY-(D1Mgh5-D1Wox29)/Izm    Name updated 68913 APPROVED
2012-05-11 SHRSP.WKY-(D1Mgh5-D1Wox29)/Izm    SHRSP.WKY-(D1Mgh5-D1Wox29)/Izm    Name updated 68913 APPROVED