Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: DA.ACI-(D12Wox12-D12Rat53)/Arb

Symbol: DA.ACI-(D12Wox12-D12Rat53)/Arb
Strain: DA.ACI-(D12Wox12-D12Rat53)
Substrain: Arb
RGD ID: 1643007
Citation ID: RRID:RGD_1643007
Ontology ID: RS:0001217
Also Known As: DA.ACI(Cia25); DA.ACI-(D12Wox12-D12Rat53)/Arb; DA.ACI-(D12Wox12-D12Rat53)/Arb
Type: congenic
Available Source: Not Available
Origination: The National Institute of Arthritis and Musculoskeletal and Skin Diseases, Bethesda, Maryland
Description: ACI/SegHsd and DA/OlaHsd were crossed to get F2 animals which were backcrossed with DA/OlaHsd and the progeny genotyped then backcrossed with DA/OlaHsd
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21219,610,889 - 42,828,880RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01222,650,721 - 48,598,906RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01224,663,002 - 50,380,790RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41220,932,555 - 43,863,270RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Cia25 On rat chromosome 12 regulates severity of autoimmune arthritis induced with pristane and collagen. Brenner M, etal., Ann Rheum Dis. 2007 Feb 28;.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D12Wox12)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21219,610,889 - 19,611,095 (+)MAPPER
Rnor_6.01222,650,721 - 22,650,922NCBI
Rnor_5.01224,663,002 - 24,663,203UniSTS
RGSC_v3.41220,932,556 - 20,932,757UniSTS
RGSC_v3.41220,932,555 - 20,932,757RGD
RGSC_v3.11220,922,167 - 20,922,369RGD
Celera1221,386,649 - 21,386,850UniSTS
RH 3.4 Map12277.5UniSTS
RH 3.4 Map12277.5RGD
RH 2.0 Map12197.1RGD
Cytogenetic Map12q11-q12UniSTS

Flank 2 / 1 (D12Rat53)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21242,828,758 - 42,828,880 (+)MAPPER
Rnor_6.01248,598,785 - 48,598,906NCBI
Rnor_5.01250,380,669 - 50,380,790UniSTS
RGSC_v3.41243,863,148 - 43,863,270RGD
RGSC_v3.41243,863,149 - 43,863,270UniSTS
RGSC_v3.11243,726,536 - 43,726,658RGD
Celera1244,430,343 - 44,430,476UniSTS
RH 2.0 Map12480.4RGD
SHRSP x BN Map1251.7899RGD
Cytogenetic Map12q16UniSTS
Strain QTL Data
Symbol Name Trait
Pia42 Pristane induced arthritis QTL 42 joint integrity trait   (VT:0010548)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_life_disease these have milder pristane-induced arthritis and collagen-induced arthritis 1600250
strain_phys_biochem males have a reduced level of anti-CII autoantibodies 1600250

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-29 DA.ACI-(D12Wox12-D12Rat53)/Arb    DA.ACI-(D12Wox12-D12Rat53)/Arb    Name updated 68913 APPROVED
2013-07-29 DA.ACI-(D12Wox12-D12Rat53)/Arb    DA.ACI-(D12Wox12-D12Rat53)/Arb    Name updated 68913 APPROVED
2013-07-29 DA.ACI-(D12Wox12-D12Rat53)/Arb    DA.ACI-(D12Wox12-D12Rat53)/Arb    Name updated 68913 APPROVED