Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: SS-Has1m2Mcwi

Symbol: SS-Has1m2Mcwi
Strain: SS-Has1m2
Substrain: Mcwi
RGD ID: 1642274
Citation ID: RRID:RGD_1642274
Ontology ID: RS:0001468
Alleles: Has1m2Mcwi
Also Known As: SS-Has1m2Mcwi; SS-Has1^[m2Mcwi]
Type: mutant
Available Source: Not Available
Origination: PhysGen
Description: Male founders are injected with ENU (N-ethyl-N-nitrosourea) and harem bred to females. The pups are genetically screened using the TILLING assay (an enzyme-based heteroduplex cleavage assay) as well as nucleotide sequencing to identify and characterize target genes possessing ENU-induced mutations. V155L mutation is generated from the codon change GTC/CTC.
Last Known Status: Extinct (as of 2017-01-26)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2158,693,411 - 58,705,653RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0159,720,612 - 59,732,409RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0160,640,270 - 60,652,067RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4156,503,365 - 56,516,133RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. PhysGen Strains PhysGen strains
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region


Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-21 SS-Has1m2Mcwi    SS-Has1m2Mcwi    Symbol updated 68687 APPROVED
2014-03-21 SS-Has1m2Mcwi    SS-Has1m2Mcwi    Name updated 68913 APPROVED
2014-03-21 SS-Has1m2Mcwi    SS-Has1m2Mcwi    Symbol updated 68687 APPROVED
2014-03-21 SS-Has1m2Mcwi    SS-Has1m2Mcwi    Name updated 68913 APPROVED