Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: WF.BBDR-(D4Got48-D4Got43)/Wor

Symbol: WF.BBDR-(D4Got48-D4Got43)/Wor
Strain: WF.BBDR-(D4Got48-D4Got43)
Substrain: Wor
RGD ID: 1641852
Citation ID: RRID:RGD_1641852
Ontology ID: RS:0001580
Also Known As: 7r1a; WF.BBDR-(D4Got48-D4Got43)/Wor
Type: congenic
Available Source: Not Available
Origination: University of Massachusetts Medical School, Worcerster, MA
Description: This congenic substrain was generated by the marker-assisted protocol where a segment of WF.BBDR-(D4Rat96-D4Rat44)/Wor were transferred to WF background and the animals were screened using microsatellite markers.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2466,800,270 - 69,276,226RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0465,776,688 - 68,645,203RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0465,594,194 - 133,430,955RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4465,628,995 - 68,036,772RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
# Reference Title Reference Citation
1. REFINEMENT OF THE IDDM4 DIABETES SUSCEPTIBILITY LOCUS REVEALS TCRV{beta}4 AS A CANDIDATE GENE. Blankenhorn EP, etal., Ann N Y Acad Sci. 2007 Mar 21;.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D4Got48)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2466,800,270 - 66,800,498 (+)MAPPER
Rnor_6.0465,776,688 - 65,776,913NCBI
Rnor_5.0465,594,194 - 65,594,419UniSTS
RGSC_v3.4465,628,995 - 65,629,221RGD
RGSC_v3.4465,628,996 - 65,629,221UniSTS
RGSC_v3.1465,905,125 - 65,905,351RGD
Celera461,821,604 - 61,821,829UniSTS
RH 3.4 Map4418.6UniSTS
RH 3.4 Map4418.6RGD
RH 2.0 Map4456.2RGD
Cytogenetic Map4q22UniSTS

Flank 2 / 1 (D4Got43)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2469,276,042 - 69,276,226 (+)MAPPER
Rnor_6.0468,645,020 - 68,645,203NCBI
Rnor_5.04133,430,772 - 133,430,955UniSTS
RGSC_v3.4468,036,588 - 68,036,772RGD
RGSC_v3.4468,036,589 - 68,036,772UniSTS
RGSC_v3.1468,312,718 - 68,312,902RGD
Celera464,279,064 - 64,279,247UniSTS
RH 3.4 Map4404.51RGD
RH 3.4 Map4404.51UniSTS
Cytogenetic Map4q22UniSTS

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-28 WF.BBDR-(D4Got48-D4Got43)/Wor    WF.BBDR-(D4Got48-D4Got43)/Wor    Name updated 68913 APPROVED
2013-08-28 WF.BBDR-(D4Got48-D4Got43)/Wor    WF.BBDR-(D4Got48-D4Got43)/Wor    Name updated 68913 APPROVED