Strain Report - Rat Genome Database

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Strain: WKY.SHR-(D2Rat42-D2Rat139)

Symbol: WKY.SHR-(D2Rat42-D2Rat139)
Strain: WKY.SHR-(D2Rat42-D2Rat139)
RGD ID: 1359001
Citation ID: RRID:RGD_1359001
Ontology ID: RS:0001033
Also Known As: 2b;WKY/lj-SHR/lj-2b; WKY.SHR-(D2Rat42-D2Rat139)
Type: congenic
Available Source: Not Available
Origination: Dept Pharmacology, Univ. of California San Diego, La Jolla, CA USA
Description: Congenic strains were constructed by repeated backcross of an (SHR/NCrl x WKY/NCrl)F1 to the WKY/Crl recipient strain with selection for chromosome 2 SHR markers
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22174,110,900 - 223,490,532RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02188,013,923 - 240,243,929RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02207,416,346 - 258,769,070RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42180,768,203 - 232,533,087RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Reciprocal rat chromosome 2 congenic strains reveal contrasting blood pressure and heart rate QTL. Alemayehu A, etal., Physiol Genomics 2002 Sep 3;10(3):199-210.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D2Rat42)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22174,110,900 - 174,111,027 (+)MAPPER
Rnor_6.02188,013,923 - 188,014,049NCBI
Rnor_5.02207,416,346 - 207,416,472UniSTS
RGSC_v3.42180,768,205 - 180,768,331UniSTS
RGSC_v3.42180,768,203 - 180,768,626RGD
RGSC_v3.12180,718,311 - 180,718,437RGD
Celera2168,055,216 - 168,055,342UniSTS
RH 3.4 Map21154.8RGD
RH 3.4 Map21154.8UniSTS
RH 2.0 Map2504.6RGD
SHRSP x BN Map270.0198RGD
FHH x ACI Map276.5599RGD
Cytogenetic Map2q34UniSTS

Flank 2 / 1 (D2Rat139)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22223,490,383 - 223,490,532 (+)MAPPER
Rnor_6.02240,243,781 - 240,243,929NCBI
Rnor_5.02258,768,922 - 258,769,070UniSTS
RGSC_v3.42232,532,938 - 232,533,087RGD
RGSC_v3.42232,532,939 - 232,533,087UniSTS
RGSC_v3.12232,519,679 - 232,519,827RGD
Celera2215,695,586 - 215,695,734UniSTS
RH 3.4 Map21560.3UniSTS
RH 3.4 Map21560.3RGD
RH 2.0 Map21118.9RGD
SHRSP x BN Map295.3998RGD
FHH x ACI Map2110.7298RGD
Strain QTL Data
Symbol Name Trait
Bp275 Blood pressure QTL 275 arterial blood pressure trait   (VT:2000000)    

Additional Information