Strain Report - Rat Genome Database

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Strain: SS.SR-(rs66001705-D5Mgh16)/Opaz

Symbol: SS.SR-(rs66001705-D5Mgh16)/Opaz
Strain: SS.SR-(rs66001705-D5Mgh16)
Substrain: Opaz
RGD ID: 12790964
Citation ID: RRID:RRRC_00614
Ontology ID: RS:0004367
Also Known As: S.R5C; SS.SR-(rs66001705-D5Mgh16)/Opaz
Type: congenic
Available Source: Rat Resource and Research Center
Origination: Boston University School of Medicine, Boston, Massachusetts
Description: Congenic strain which was generated using the speed congenic strategy by backcrossing SS/JrHsd and SR/JrHsd parental strains. The SR chromosome 5 region from rs66001705 to D5Mgh16 was introgressed on the genetic background of SS.
Last Known Status: Cryopreserved Sperm (as of 2017-02-22)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25161,317,276 - 161,317,411RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05155,945,375 - 167,946,134RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05159,701,342 - 171,522,762RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.45156,360,938 - 168,006,088RGD_MAPPER_PIPELINERGSC3.4






References

Region

Position Markers

Flank 1 / 1 (rs66001705)
Rat AssemblyChrPosition (strand)Source
Rnor_6.05155,945,375 - 155,945,375RGD
Rnor_5.05159,701,342 - 159,701,342RGD
RGSC_v3.45156,360,938 - 156,360,938RGD

Flank 2 / 1 (D5Mgh16)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,317,276 - 161,317,411 (+)MAPPER
Rnor_6.05167,946,000 - 167,946,134NCBI
Rnor_5.05171,522,628 - 171,522,762UniSTS
RGSC_v3.45168,005,953 - 168,006,088RGD
RGSC_v3.45168,005,954 - 168,006,088UniSTS
RGSC_v3.15168,016,142 - 168,016,276RGD
Celera5159,570,955 - 159,571,089UniSTS
RH 3.4 Map51126.1UniSTS
RH 3.4 Map51126.1RGD
RH 2.0 Map51109.7RGD

Additional Information

Database Acc Id Source(s)
RRRC RRRC:00614 RGD