Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: LEW.SS-(D7Rat27-D7Mgh1)(D17Rat15-D17Rat51)(D10Mgh6-D10Mgh1)/Ayd

Symbol: LEW.SS-(D7Rat27-D7Mgh1)(D17Rat15-D17Rat51)(D10Mgh6-D10Mgh1)/Ayd
Strain: LEW.SS-(D7Rat27-D7Mgh1)(D17Rat15-D17Rat51)(D10Mgh6-D10Mgh1)
Substrain: Ayd
RGD ID: 10402852
Citation ID: RRID:RGD_10402852
Ontology ID: RS:0004077
Also Known As: (C7/C17/C10)L.S; LEW.SS-(D7Rat27-D7Mgh1)(D17Rat15-D17Rat51)(D10Mgh6-D10Mgh1)/Ayd; Lewis.DSS-(D7Rat27-D7Mgh1)(D17Rat15-D17Rat51)(D10Mgh6-D10Mgh1)/Lt
Type: congenic
Available Source: Not Available
Origination: Research Centre, Centre Hospitalier de l'Universite de Monteal (CHUM), Quebec, Canada
Description: multiple congenic strain was generated by combining the three separate congenic strains
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21731,368,391 - 85,119,583RGD_MAPPER_PIPELINEmRatBN7.2
mRatBN7.2729,409,683 - 29,409,863RGD_MAPPER_PIPELINEmRatBN7.2
mRatBN7.21061,345,276 - 61,345,413RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01732,055,882 - 90,012,722RGD_MAPPER_PIPELINERnor6.0
Rnor_6.01064,648,175 - 64,648,311RGD_MAPPER_PIPELINERnor6.0
Rnor_6.0735,867,729 - 35,867,908RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01733,949,701 - 91,678,127RGD_MAPPER_PIPELINERnor5.0
Rnor_5.01063,366,082 - 63,366,218RGD_MAPPER_PIPELINERnor5.0
Rnor_5.0735,931,747 - 35,931,926RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41737,727,971 - 96,587,905RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.41067,677,924 - 67,678,060RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.4732,004,504 - 32,004,684RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
mean arterial blood pressure

References

References - curated
# Reference Title Reference Citation
1. Hypertension Suppression, Not a Cumulative Thrust of Quantitative Trait Loci, Predisposes Blood Pressure Homeostasis to Normotension. Crespo K, etal., Circ Cardiovasc Genet. 2015 Aug;8(4):610-7. doi: 10.1161/CIRCGENETICS.114.000965. Epub 2015 May 11.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D7Mgh1)
Rat AssemblyChrPosition (strand)Source
Cytogenetic Map7 RGD

Flank 1 / 1 (D7Rat27)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2729,409,683 - 29,409,863 (+)MAPPER
Rnor_6.0735,867,729 - 35,867,908NCBI
Rnor_5.0735,931,747 - 35,931,926UniSTS
RGSC_v3.4732,004,505 - 32,004,684UniSTS
RGSC_v3.4732,004,504 - 32,004,684RGD
RGSC_v3.1732,024,776 - 32,024,955RGD
Celera726,489,080 - 26,489,243UniSTS
RH 3.4 Map7230.5RGD
RH 3.4 Map7230.5UniSTS
RH 2.0 Map7203.7RGD
SHRSP x BN Map722.05RGD
FHH x ACI Map712.22RGD
Cytogenetic Map7q13UniSTS

Flank 1 / 2 (D17Rat15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21731,368,391 - 31,368,534 (+)MAPPER
Rnor_6.01732,598,584 - 32,598,726NCBI
Rnor_6.01732,055,882 - 32,056,024NCBI
Rnor_5.01733,949,701 - 33,949,843UniSTS
Rnor_5.01734,490,790 - 34,490,932UniSTS
RGSC_v3.41737,727,971 - 37,728,114RGD
RGSC_v3.41737,727,972 - 37,728,114UniSTS
RGSC_v3.11737,730,658 - 37,730,959RGD
Celera1730,930,785 - 30,930,927UniSTS
SHRSP x BN Map1725.54RGD
SHRSP x BN Map1725.54UniSTS
FHH x ACI Map1730.0699RGD

Flank 2 / 2 (D17Rat51)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,119,450 - 85,119,583 (-)MAPPER
Rnor_6.01790,012,592 - 90,012,722NCBI
Rnor_5.01791,677,997 - 91,678,127UniSTS
RGSC_v3.41796,587,775 - 96,587,905UniSTS
RGSC_v3.41796,587,774 - 96,587,905RGD
RGSC_v3.11796,598,608 - 96,598,738RGD
Celera1783,775,845 - 83,775,971UniSTS
RH 3.4 Map17848.7RGD
RH 3.4 Map17848.7UniSTS
RH 2.0 Map17730.2RGD
SHRSP x BN Map1747.5399RGD
FHH x ACI Map1768.73RGD
Cytogenetic Map17q12.3UniSTS

Flank 1 / 3 (D10Mgh6)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21061,345,276 - 61,345,413 (+)MAPPER
Rnor_6.01064,648,175 - 64,648,311NCBI
Rnor_5.01063,366,082 - 63,366,218UniSTS
RGSC_v3.41067,677,924 - 67,678,060UniSTS
Celera1060,360,352 - 60,360,488UniSTS
RH 2.0 Map10641.2RGD
SHRSP x BN Map1045.5399RGD
Cytogenetic Map10q26UniSTS

Flank 2 / 3 (D10Mgh1)
Rat AssemblyChrPosition (strand)Source
Celera10102,748,696 - 102,748,839UniSTS
RH 2.0 Map101407.7RGD
Cytogenetic Map10 RGD

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-03 LEW.SS-(D7Rat27-D7Mgh1)(D17Rat15-D17Rat51)(D10Mgh6-D10Mgh1)/Ayd    LEW.SS-(D7Rat27-D7Mgh1)(D17Rat15-D17Rat51)((D10Mgh6-D10Mgh1)/Ayd    Symbol updated 68687 APPROVED
2015-11-03 LEW.SS-(D7Rat27-D7Mgh1)(D17Rat15-D17Rat51)(D10Mgh6-D10Mgh1)/Ayd    LEW.SS-(D7Rat27-D7Mgh1)(D17Rat15-D17Rat51)((D10Mgh6-D10Mgh1)/Ayd    Name updated 68913 APPROVED
2015-11-03 LEW.SS-(D7Rat27-D7Mgh1)(D17Rat15-D17Rat51)(D10Mgh6-D10Mgh1)/Ayd    LEW.SS-(D7Rat27-D7Mgh1)(D17Rat15-D17Rat51)((D10Mgh6-D10Mgh1)/Ayd    Symbol updated 68687 APPROVED
2015-11-03 LEW.SS-(D7Rat27-D7Mgh1)(D17Rat15-D17Rat51)(D10Mgh6-D10Mgh1)/Ayd    LEW.SS-(D7Rat27-D7Mgh1)(D17Rat15-D17Rat51)((D10Mgh6-D10Mgh1)/Ayd    Name updated 68913 APPROVED