Strain Report - Rat Genome Database

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Strain: SS.BN-(D13Rat124-D13Hmgc3694)/Mcwi

Symbol: SS.BN-(D13Rat124-D13Hmgc3694)/Mcwi
Strain: SS.BN-(D13Rat124-D13Hmgc3694)
Substrain: Mcwi
RGD ID: 10054473
Citation ID: RRID:RGD_10054473
Ontology ID: RS:0004019
Also Known As: SS.BN-(D13Rat124-D13Hmgc3694)/Mcwi; SSBN13-ka
Type: congenic
Available Source: Not Available
Origination: Medical College of Wisconsin, Milwaukee, Wisconsin
Description: SS/JrHsdMcwi were crossed with SS-13BN/Mcwi, rats from F1 were intercrossed and genotyped to get the congenic strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,228,358 - 45,228,590RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01350,609,228 - 50,609,459RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01355,662,705 - 55,662,936RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41346,721,037 - 46,721,269RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Data registered by Dr. Melinda Dwinell’s group Personal communication between Dr. Melinda Dwinell’s group and the RGD curators
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D13Rat124)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21345,228,358 - 45,228,590 (+)MAPPER
Rnor_6.01350,609,228 - 50,609,459NCBI
Rnor_5.01355,662,705 - 55,662,936UniSTS
RGSC_v3.41346,721,038 - 46,721,269UniSTS
RGSC_v3.41346,721,037 - 46,721,269RGD
RGSC_v3.11346,735,081 - 46,735,312RGD
Celera1345,558,778 - 45,559,009UniSTS
RH 3.4 Map13174.1RGD
RH 3.4 Map13174.1UniSTS
RH 2.0 Map13377.4RGD
SHRSP x BN Map1314.7498RGD

Flank 2 / 1 (D13Hmgc3694)
Rat AssemblyChrPosition (strand)Source
Cytogenetic Map13 RGD

Additional Information