SCL59_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
QTL Registration

QTL: SCL59_H (Serum cholesterol level QTL 59 (human)) Homo sapiens

Symbol: SCL59_H
Name: Serum cholesterol level QTL 59 (human)
RGD ID: 1559256
Trait: Lipid level
Measurement Type: total cholesterol
LOD Score: 2.48
P Value: Not Available
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371716,064,515 - 80,253,028RGDGRCh37
Build 361716,005,240 - 77,846,317RGDNCBI36
Cross Type: Not Available
Population Stats: participants ascertained without regard to health through households with 2 or more children enrolled in Rochester, Minnesota schools



References

References - curated
# Reference Title Reference Citation
1. Genome-wide linkage analysis reveals evidence of multiple regions that influence variation in plasma lipid and apolipoprotein levels associated with risk of coronary heart disease. Klos KL, etal., Arterioscler Thromb Vasc Biol 2001 Jun;21(6):971-8.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (D17S1843)
Human AssemblyChrPosition (strand)Source
GRCh371716,064,515 - 16,064,713UniSTS
Build 361716,005,240 - 16,005,438RGD
Celera1715,967,425 - 15,967,613RGD
Cytogenetic Map17p11.2UniSTS
HuRef1715,931,419 - 15,931,607UniSTS
Marshfield Genetic Map1741.12RGD
Marshfield Genetic Map1741.12UniSTS
Genethon Genetic Map1744.0UniSTS
deCODE Assembly Map1746.18UniSTS
Whitehead-YAC Contig Map17 UniSTS
Peak: (D17S928)
Human AssemblyChrPosition (strand)Source
GRCh371780,252,880 - 80,253,028UniSTS
Build 361777,846,169 - 77,846,317RGD
Celera1776,846,325 - 76,846,473RGD
Cytogenetic Map17qUniSTS
HuRef1775,651,722 - 75,651,870UniSTS
Marshfield Genetic Map17126.46UniSTS
Marshfield Genetic Map17126.46RGD
Genethon Genetic Map17128.7UniSTS
TNG Radiation Hybrid Map1737381.0UniSTS
deCODE Assembly Map17135.67UniSTS
GeneMap99-GB4 RH Map17539.36UniSTS
NCBI RH Map17810.0UniSTS
Flank 2: (D17S928)
Human AssemblyChrPosition (strand)Source
GRCh371780,252,880 - 80,253,028UniSTS
Build 361777,846,169 - 77,846,317RGD
Celera1776,846,325 - 76,846,473RGD
Cytogenetic Map17qUniSTS
HuRef1775,651,722 - 75,651,870UniSTS
Marshfield Genetic Map17126.46UniSTS
Marshfield Genetic Map17126.46RGD
Genethon Genetic Map17128.7UniSTS
TNG Radiation Hybrid Map1737381.0UniSTS
deCODE Assembly Map17135.67UniSTS
GeneMap99-GB4 RH Map17539.36UniSTS
NCBI RH Map17810.0UniSTS


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cand_genes P4HB 1556852
qtl_population participants ascertained without regard to health through households with 2 or more children enrolled in Rochester, Minnesota schools 1556852
qtl_population_details 1484 participants; 779 females and 705 males from 232 multigenerational pedigrees with an average of 2.94 children per pedigree 1556852
qtl_statistics_details SOLAR program was used for variance-components method of linkage analysis 1556852