Amd1 Marker Search Result - Rat Genome Database

Symbol:

Amd1

Previously known as:

RGD ID:

7206064

Expected Size:

641 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	149,273,775 - 149,274,413 (-)	MAPPER	mRatBN7.2
Rnor_6.0	14	51,485,458 - 51,486,095	NCBI	Rnor6.0
Rnor_5.0	14	51,644,789 - 51,645,426	UniSTS	Rnor5.0
Cytogenetic Map	20	q12	UniSTS
Cytogenetic Map	X	q37	UniSTS

Is Marker For:

Genes: Amd1 Amd1-ps2

Annotation

References - curated

#	Reference Title	Reference Citation
1.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence

Region

Genes in Region

The following Genes overlap with this region.

RGD ID	Symbol	Name	Chr	Start	Stop	Species
1583841	Amd1-ps2	adenosylmethionine decarboxylase 1, pseudogene 2	X	149273397	149276440	Rat

Nucleotide Sequences


RefSeq Transcripts	NM_031011.2	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC061532.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474187.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232080.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234346.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JH618124.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M34464.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U40718.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	100567703	150256146	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat
634346	Insul4	Insulin level QTL 4	0		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	X	126975089	152453651	Rat

Additional Information

External Database Links

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message