D5Uwm56 Marker Search Result - Rat Genome Database

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Marker: D5Uwm56

Symbol: D5Uwm56
Previously known as: UW609; oxsts8437; 
RGD ID: 69568
Expected Size: 116 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.253,957,953 - 3,958,063 (+)MAPPERmRatBN7.2
Rnor_6.053,362,091 - 3,362,200NCBIRnor6.0
Rnor_5.053,349,446 - 3,349,555UniSTSRnor5.0
RGSC_v3.453,084,892 - 3,085,002RGDRGSC3.4
RGSC_v3.453,084,893 - 3,085,002UniSTSRGSC3.4
RGSC_v3.153,084,892 - 3,085,002RGD
Celera53,551,388 - 3,551,497UniSTS
Cytogenetic Map5q11UniSTS
Is Marker For: Genes:   Kcnb2  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Electronic Submission of SSLP Data Sets Gould M, Shepel L, Feb.(9) 2001. University of Wisconsin Medical School, McArdle Cancer Research Center
3. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer ACTCCAGCTTAAGATAGGCTC
Reverse Primer GACTTGGTTTTCAAAAAGGG
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
621349Kcnb2potassium voltage-gated channel subfamily B member 2535670124028564Rat

Nucleotide Sequences
GenBank Nucleotide AF096566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
631551Vetf1Vascular elastic tissue fragility QTL 150.0001aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)522822265904428Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
Database Acc Id Source(s)
NCBI Gene 117105 UniSTS
UniSTS 240012 UniSTS