PMC263848P2 Marker Search Result - Rat Genome Database

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Marker: PMC263848P2

Symbol: PMC263848P2
Previously known as:
RGD ID: 5504518
Expected Size: 121 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21520,630,798 - 20,630,919 (+)MAPPERmRatBN7.2
Rnor_6.01524,164,319 - 24,164,439NCBIRnor6.0
Rnor_5.01528,105,061 - 28,105,181UniSTSRnor5.0
RGSC_v3.41523,337,788 - 23,337,908UniSTSRGSC3.4
Celera1521,025,304 - 21,025,424UniSTS
Cytogenetic Map15p14UniSTS
Is Marker For: Genes:   Lgals3  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GGTTTGCCACTCTCAAAGGG
Reverse Primer TCCACTTTAACCCCCGCTTCAATGAGA
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
69356Lgals3galectin 3152062008320632019Rat

Nucleotide Sequences
RefSeq Transcripts NM_031832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC089054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J02962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M13697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)colorectal tumor number (CMO:0001794)15226636822711984Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 83781 UniSTS
UniSTS 272334 UniSTS