| 2301970 | Bw81 | Body weight QTL 81 | 5.19 | | Body weight | | 3 | 39052756 | 158038027 | Rat |
| 2301971 | Cm71 | Cardiac mass QTL 71 | 4.63 | | Cardiac mass | left ventricle | 3 | 39052756 | 158038027 | Rat |
| 1559282 | Emca5 | Estrogen-induced mammary cancer QTL 5 | 3.9 | | Mammary tumor susceptibility | estradiol-induced | 3 | 41054012 | 171063335 | Rat |
| 2292591 | Esta4 | Estrogen-induced thymic atrophy QTL 4 | | | Gland mass | thymus | 3 | 44551252 | 149496698 | Rat |
| 1581568 | Rf53 | Renal function QTL 53 | | | Renal function | urine protein level | 3 | 53876762 | 163443738 | Rat |
| 1581546 | Pur13 | Proteinuria QTL 13 | 2.93 | .0335 | Renal function | urine protein level | 3 | 76620970 | 148642985 | Rat |
| 631841 | Niddm39 | Non-insulin dependent diabetes mellitus QTL 39 | 3.36 | | Glucose level | post-pancreatectomy | 3 | 93894678 | 161985069 | Rat |
| 2293087 | Iddm27 | Insulin dependent diabetes mellitus QTL 27 | 2.37 | | Glucose level | insulin-dependent | 3 | 96506745 | 149496698 | Rat |
| 2312659 | Slep7 | Serum leptin concentration QTL 7 | | .001 | Hormone level | leptin | 3 | 97523869 | 170016653 | Rat |
| 2312670 | Bw94 | Body weight QTL 94 | | .01 | Body weight | adiposity index | 3 | 97523869 | 170016653 | Rat |
| 2312673 | Scl63 | Serum cholesterol level QTL 63 | | .001 | Lipid level | serum cholesterol | 3 | 97523869 | 170016653 | Rat |
| 2302373 | Gluco39 | Glucose level QTL 39 | 5.01 | | Glucose level | | 3 | 97524000 | 163778606 | Rat |
| 1300161 | Rf10 | Renal function QTL 10 | 3.57 | | Renal function | hypertension related renal vascular resistance | 3 | 101298208 | 163335184 | Rat |
| 619618 | Rf3 | Renal disease susceptibility QTL 3 | 6.5 | .001 | Renal function | urine albumin excretion rate to body weight ratio | 3 | 108688653 | 153688653 | Rat |
| 1578754 | Stresp16 | Stress response QTL 16 | 4 | .001 | Stress response | plasma renin activity | 3 | 113902006 | 158902006 | Rat |
| 1576306 | Schws3 | Schwannoma susceptibility QTL 3 | | .001 | Neural tumor susceptibility | tumor incidence | 3 | 120714678 | 165714678 | Rat |
| 1300173 | Rf11 | Renal function QTL 11 | 3.38 | | Renal function | hypertension related renal blood flow | 3 | 121618954 | 147990731 | Rat |
| 1300159 | Kidm4 | Kidney mass QTL 4 | 3.83 | | Kidney mass | hypertension related | 3 | 121618954 | 159769019 | Rat |
| 1598877 | Bp285 | Blood pressure QTL 285 | 1.5 | .03 | Blood pressure | systolic | 3 | 122541511 | 167541511 | Rat |
| 631541 | Bp81 | Blood pressure QTL 81 | 4 | | Blood pressure | systolic | 3 | 124893448 | 171063335 | Rat |
| 2303620 | Vencon4 | Ventilatory control QTL 4 | 3.1 | | Ventilatory control | hypoxic challenge | 3 | 127988419 | 170016653 | Rat |
| 631673 | Iddm13 | Insulin dependent diabetes mellitus QTL 13 | 1.3 | .663 | Glucose level | | 3 | 131188558 | 163778754 | Rat |
| 1578653 | Vnigr3 | Vascular neointimal growth QTL 3 | 3.1 | | Vascular neointimal growth after injury | blood vessel neointimal area | 3 | 132947812 | 171063335 | Rat |
| 1578656 | Vnigr2 | Vascular neointimal growth QTL 2 | 4.2 | | Vascular neointimal growth after injury | blood vessel lumen size | 3 | 132947812 | 171063335 | Rat |
| 2298477 | Eau4 | Experimental allergic uveoretinitis QTL 4 | | .0011 | Uvea inflammation | | 3 | 139485124 | 171063335 | Rat |
| 5686842 | Rf59 | Renal function QTL 59 | | | Renal function | urine protein level | 3 | 141890118 | 149038578 | Rat |
| 1331726 | Bp208 | Blood pressure QTL 208 | 3.129 | | Blood pressure | mean arterial | 3 | 143214619 | 164269487 | Rat |
| 61335 | Bp20 | Blood pressure QTL 20 | 3 | | Blood pressure | salt-loaded systolic | 3 | 143214737 | 158037866 | Rat |
| 1298068 | Bp167 | Blood pressure QTL 167 | | .004 | Blood pressure | systolic | 3 | 144002709 | 171063335 | Rat |