| 1354648 | Bp239 | Blood pressure QTL 239 | | .001 | Blood pressure | systolic | 2 | 66680209 | 235799396 | Rat |
| 1354622 | Kidm16 | Kidney mass QTL 16 | 3 | | Kidney mass | left kidney mass | 2 | 82826122 | 231465091 | Rat |
| 1354649 | Kidm17 | Kidney mass QTL 17 | 2.9 | | Kidney mass | left kidney mass adjujsted for tibia length | 2 | 82826122 | 236153712 | Rat |
| 1331805 | Cm29 | Cardiac mass QTL 29 | 3.50746 | | Cardiac mass | | 2 | 146228221 | 232307864 | Rat |
| 1331794 | Bp202 | Blood pressure QTL 202 | 3.66819 | | Blood pressure | systolic | 2 | 146228221 | 232307864 | Rat |
| 1641925 | Alcrsp2 | Alcohol response QTL 2 | | | Alcohol response | loss of righting reflex | 2 | 155101972 | 230157845 | Rat |
| 1641891 | Alcrsp17 | Alcohol response QTL 17 | | | Alcohol response | loss of righting reflex | 2 | 155101972 | 247295816 | Rat |
| 1358356 | Srcrt1 | Stress Responsive Cort QTL1 | 3.66 | | Hypothalamic-pituitary-adrenal axis | corticosterone post-stress | 2 | 167857161 | 231465091 | Rat |
| 2306901 | Bp337 | Blood pressure QTL 337 | | .01 | Blood pressure | salt-loaded systolic | 2 | 170338294 | 236153712 | Rat |
| 1331734 | Bp204 | Blood pressure QTL 204 | 3.61192 | | Blood pressure | mean arterial | 2 | 174730375 | 232307864 | Rat |
| 2300189 | Bmd48 | Bone mineral density QTL 48 | 5.8 | .0001 | Bone mineral density | | 2 | 187512114 | 232512114 | Rat |
| 61417 | Cia10 | Collagen induced arthritis QTL 10 | 3.4 | | Joint/bone inflammation | type II collagen induced | 2 | 188136088 | 233136088 | Rat |
| 738013 | Alc15 | Alcohol consumption QTL 15 | 4.1 | .00022 | Consumption level | alcohol amount | 2 | 192489056 | 237489056 | Rat |
| 1581499 | Esta2 | Estrogen-induced thymic atrophy QTL 2 | | | Gland mass | thymus | 2 | 197256223 | 235940600 | Rat |
| 61366 | Iddm3 | Insulin dependent diabetes mellitus QTL 3 | 4.7 | | Glucose level | | 2 | 197256223 | 242256223 | Rat |
| 61398 | Bp50 | Blood pressure QTL 50 | 4.4 | | Blood pressure | systolic | 2 | 197256223 | 242256223 | Rat |
| 2301408 | Kidm36 | Kidney mass QTL 36 | | .002 | Kidney mass | | 2 | 198324984 | 235811584 | Rat |
| 2317752 | Glom23 | Glomerulus QTL 23 | 3.6 | | Renal pathology | urine protein level | 2 | 201223893 | 254933362 | Rat |
| 1598813 | Memor9 | Memory QTL 9 | 2.7 | | Memory | navigation-spatial | 2 | 207443643 | 243502158 | Rat |
| 1598835 | Anxrr18 | Anxiety related response QTL 18 | 2.98 | | Anxiety response | defensive burying- rearing | 2 | 210033012 | 255033012 | Rat |
| 2298479 | Eau5 | Experimental allergic uveoretinitis QTL 5 | | .0021 | Uvea inflammation | | 2 | 210636008 | 247306073 | Rat |
| 1302789 | Stl26 | Serum triglyceride level QTL 26 | 3.1 | .0035 | Lipid level | triglyceride level | 2 | 212168913 | 242131387 | Rat |
| 2299161 | Iddm33 | Insulin dependent diabetes mellitus QTL 33 | 2.98 | | Glucose level | insulin-dependent | 2 | 214633709 | 247295816 | Rat |
| 631563 | Hcuc3 | Hepatic copper content QTL 3 | 3.87 | | Copper level | hepatic | 2 | 217985582 | 238139978 | Rat |
| 1549836 | Bss2 | Bone structure and strength QTL 2 | 7.5 | | Bone structure and strength | Femoral midshaft moment of inertia | 2 | 221002002 | 258207540 | Rat |
| 1298075 | Scl17 | Serum cholesterol level QTL 17 | 3.4 | | Lipid level | cholesterol | 2 | 221002002 | 258207540 | Rat |
| 7207482 | Bss107 | Bone structure and strength QTL 107 | 7 | | Bone strength | Femoral ultimate force | 2 | 221002002 | 258207540 | Rat |
| 7207484 | Bss108 | Bone structure and strength QTL 108 | 5.3 | | Bone strength | Femoral energy to break | 2 | 221002002 | 258207540 | Rat |
| 7207490 | Bss111 | Bone structure and strength QTL 111 | 6.4 | | Bone structure | Femoral midshaft cortical area | 2 | 221002002 | 258207540 | Rat |
| 2317885 | Alcrsp28 | Alcohol response QTL 28 | 2.1 | .63 | Alcohol response | blood ethanol concentration | 2 | 222136025 | 258207540 | Rat |
| 1300126 | Bp175 | Blood pressure QTL 175 | 3.46 | | Blood pressure | salt-loaded time series calculation | 2 | 222939299 | 256217383 | Rat |
| 2313073 | Bmd75 | Bone mineral density QTL 75 | 4.1 | .0001 | Bone mineral density | | 2 | 224179988 | 247306073 | Rat |
| 631514 | Scl8 | Serum cholesterol level QTL8 | 4.4 | | Lipid level | cholesterol | 2 | 224795742 | 258207540 | Rat |
| 1331767 | Hrtrt12 | Heart rate QTL 12 | 3.373 | | Heart rate | | 2 | 227309864 | 250463890 | Rat |
| 1359019 | Hrtrt19 | Heart rate QTL 19 | 2.9 | | Heart rate | stress-induced early trial bradycardia | 2 | 228663949 | 234266109 | Rat |
| 2293833 | Kiddil8 | Kidney dilation QTL 8 | 2.9 | | Renal pathology | kidney dilation | 2 | 228663949 | 256217383 | Rat |
| 2293844 | Kiddil7 | Kidney dilation QTL 7 | 3.5 | | Renal pathology | kidney dilation | 2 | 228663949 | 256217383 | Rat |