PMC164851P3 Marker Search Result - Rat Genome Database

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Marker: PMC164851P3

Symbol: PMC164851P3
Previously known as:
RGD ID: 5501241
Expected Size: 279 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28109,027,109 - 109,027,605 (+)MAPPERmRatBN7.2
Rnor_6.08117,117,608 - 117,118,103NCBIRnor6.0
Rnor_5.08116,466,296 - 116,466,791UniSTSRnor5.0
Celera8108,330,025 - 108,330,520UniSTS
Is Marker For: Genes:   Gpx1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TGCTCATTGAGAATGTCGCGTCTC
Reverse Primer AGGCATTCCGCAGGAAGGTAAAGA
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2729Gpx1glutathione peroxidase 18109026905109028031Rat

Nucleotide Sequences
RefSeq Transcripts NM_030826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M21210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S50336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X07365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X12367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 24404 UniSTS
UniSTS 271523 UniSTS