AW534701 Marker Search Result - Rat Genome Database

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Marker: AW534701

Symbol: AW534701
Previously known as:
RGD ID: 5085589
Expected Size: 161 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21684,702,999 - 84,703,160 (+)MAPPERmRatBN7.2
Rnor_6.01690,641,840 - 90,642,000NCBIRnor6.0
Rnor_5.01690,027,030 - 90,027,190UniSTSRnor5.0
Celera1682,391,533 - 82,391,693UniSTS
RH 3.4 Map16794.8UniSTS
Cytogenetic Map16q12.5UniSTS
Is Marker For: Genes:   Shcbp1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GGTGAAAGAGAAAGAGGTGCAA
Reverse Primer CACATGGGAGGCAGAGGTAAG
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1590844Shcbp1SHC binding and spindle associated 1168467227784703843Rat

Nucleotide Sequences
GenBank Nucleotide JH618860.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 364648 UniSTS
UniSTS 260808 UniSTS