RH141193 Marker Search Result - Rat Genome Database

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Marker: RH141193

Symbol: RH141193
Previously known as: AA924672; 
RGD ID: 5079770
Expected Size: 182 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21927,450,558 - 27,450,740 (+)MAPPERmRatBN7.2
Rnor_6.01931,115,787 - 31,115,968NCBIRnor6.0
Rnor_5.01942,018,876 - 42,019,057UniSTSRnor5.0
RGSC_v3.41929,300,956 - 29,301,137UniSTSRGSC3.4
Celera1926,966,772 - 26,966,953UniSTS
Cytogenetic Map19q11UniSTS
Is Marker For: Genes:   Gypa  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CCACTGGATGGGTTCAGAAAGT
Reverse Primer GCAAGTCCTCCTGTGTTCTTCC
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1582935Gypaglycophorin A192745030427465940Rat

Nucleotide Sequences
RefSeq Transcripts XM_001069014.3 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003751863.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753097.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide FQ225003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FT008624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)191392640130303727Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
61328Eae8Experimental allergic encephalomyelitis QTL 84nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)192481604133061905Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 688972 UniSTS
UniSTS 223189 UniSTS