| 1354657 | Despr13 | Despair related QTL 13 | | .0022 | Activity level | climbing level | 15 | 1 | 31488303 | Rat |
| 731170 | Pur3 | Proteinuria QTL 3 | 2.3 | .0005 | Renal function | urine albumin level | 15 | 1 | 44351302 | Rat |
| 1641887 | Alcrsp14 | Alcohol response QTL 14 | | | Alcohol response | | 15 | 1 | 44953103 | Rat |
| 2298549 | Neuinf12 | Neuroinflammation QTL 12 | 2.2 | | Neuroinflammation | | 15 | 1 | 61161186 | Rat |
| 738017 | Hcas7 | Hepatocarcinoma susceptibility QTL 7 | 2.91 | | Liver tumor susceptibility | volume fraction | 15 | 2306220 | 43057384 | Rat |
| 1582251 | Gluco24 | Glucose level QTL 24 | 3.2 | .0008 | Glucose level | uptake | 15 | 10138595 | 55138595 | Rat |
| 2317750 | Glom26 | Glomerulus QTL 26 | 4.3 | | Renal pathology | urine protein level | 15 | 14072029 | 71533203 | Rat |
| 2293688 | Bss29 | Bone structure and strength QTL 29 | 5.31 | .0001 | Bone structure | | 15 | 16042557 | 61042557 | Rat |
| 2300167 | Bmd63 | Bone mineral density QTL 63 | 5.9 | .0001 | Bone mineral density | | 15 | 16042557 | 61042557 | Rat |
| 2300173 | Bmd62 | Bone mineral density QTL 62 | 12.8 | .0001 | Bone mineral density | | 15 | 16042557 | 61042557 | Rat |
| 5685002 | Bss103 | Bone structure and strength QTL 103 | 2.8 | | Bone strength | work to fail | 15 | 16365832 | 61365832 | Rat |
| 631273 | Cati2 | Cataract Ihara QTL 2 | | .001 | Cataract susceptibility | time of onset | 15 | 16458810 | 61458810 | Rat |
| 61424 | Scl1 | Serum cholesterol level QTL 1 | 7.7 | .001 | Lipid level | cholesterol | 15 | 18710622 | 87898700 | Rat |
| 1331729 | Rf42 | Renal function QTL 42 | 3.071 | | Renal function | renal blood flow | 15 | 19348148 | 80362100 | Rat |
| 631550 | Bw7 | Body weight QTL 7 | 3.6 | | Body weight | | 15 | 22452603 | 39869843 | Rat |
| 2324620 | Coatc3 | Coat color QTL 3 | | | Coat color | hooded | 15 | 22452603 | 51526246 | Rat |
| 1578660 | Bss19 | Bone structure and strength QTL 19 | 4.3 | | Bone structure | femoral neck trabecular area | 15 | 25506124 | 106177917 | Rat |
| 1578646 | Bmd18 | Bone mineral density QTL 18 | 5.2 | | Bone mineral density | femoral neck trabecular vBMD | 15 | 25506124 | 106177917 | Rat |
| 1578647 | Bmd17 | Bone mineral density QTL 17 | 4 | | Bone mineral density | femoral neck total vBMD | 15 | 25506124 | 106177917 | Rat |