BF399621 Marker Search Result - Rat Genome Database

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Marker: BF399621

Symbol: BF399621
Previously known as:
RGD ID: 5064722
Expected Size: 130 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2172,011,959 - 2,012,089 (-)MAPPERmRatBN7.2
Rnor_6.017623,260 - 623,389NCBIRnor6.0
Rnor_5.017617,422 - 617,551UniSTSRnor5.0
RGSC_v3.4177,559,715 - 7,559,844UniSTSRGSC3.4
Celera17511,519 - 511,648UniSTS
RH 3.4 Map1716.0UniSTS
Cytogenetic Map17p14UniSTS
Is Marker For: Genes:   Aopep  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GATCATCTCTCAAAGAGCGGGT
Reverse Primer GATGCATCTGCCTGTCAAAGAC
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1309592Aopepaminopeptidase O1718112812127316Rat

Nucleotide Sequences
GenBank Nucleotide CH474087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 290963 UniSTS
UniSTS 247747 UniSTS