BF386655 Marker Search Result - Rat Genome Database

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Marker: BF386655

Symbol: BF386655
Previously known as:
RGD ID: 5058126
Expected Size: 175 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2114,569,659 - 4,569,834 (+)MAPPERmRatBN7.2
Rnor_6.0114,188,829 - 4,189,003NCBIRnor6.0
Rnor_5.0117,885,091 - 7,885,265UniSTSRnor5.0
RGSC_v3.4114,288,166 - 4,288,340UniSTSRGSC3.4
Celera114,543,279 - 4,543,453UniSTS
Cytogenetic Map11p12UniSTS
Is Marker For: Genes:   Cadm2  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TTATTTCTATTCCCGGTCTCCC
Reverse Primer AAGCCATGCTCGAGAATTAACC
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1305678Cadm2cell adhesion molecule 21145483675525420Rat

Nucleotide Sequences
GenBank Nucleotide CH474018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 360687 UniSTS
UniSTS 243804 UniSTS