| 1578766 | Tcas11 | Tongue tumor susceptibility QTL 11 | 4.12 | | Tongue tumor susceptibility | tongue tumor number | 5 | 17517235 | 168005953 | Rat |
| 1549845 | Scl44 | Serum cholesterol level QTL 44 | 6 | | Lipid level | serum cholesterol, post dietary | 5 | 41498818 | 155121024 | Rat |
| 61426 | Scl2 | Serum cholesterol level QTL 2 | 7.3 | .001 | Lipid level | cholesterol | 5 | 62098646 | 149757440 | Rat |
| 61393 | Bp7 | Blood pressure QTL 7 | 4.5 | .0001 | Blood pressure | salt-loaded systolic | 5 | 62555131 | 168174140 | Rat |
| 1354598 | Srn6 | Serum renin concentration QTL 6 | 3.8 | | Renin concentration | serum | 5 | 71971592 | 157597184 | Rat |
| 1302790 | Scl20 | Serum cholesterol QTL 20 | 6.4 | .0001 | Lipid level | cholesterol level | 5 | 86116638 | 172913795 | Rat |
| 61452 | Ciaa5 | CIA Autoantibody QTL 5 | 3.5 | | Anti-type II collagen autoantibody titer | | 5 | 99080786 | 149757440 | Rat |
| 1331796 | Thshl2 | Thyroid stimulating hormone level QTL 2 | 2.3 | | Thyroid stimulating hormone level | | 5 | 101506332 | 154014139 | Rat |
| 1358187 | Emca1 | Estrogen-induced mammary cancer QTL 1 | 4.4 | | Mammary tumor susceptibility | estradiol-induced | 5 | 103677659 | 155120876 | Rat |
| 1578673 | Bmd13 | Bone mineral density QTL 13 | 4.9 | | Bone mineral density | femoral neck trabecular vBMD | 5 | 108589975 | 153589975 | Rat |
| 2317056 | Wbc3 | White blood cell count QTL 3 | 2.51 | .01 | White blood cell count | | 5 | 112840801 | 157840801 | Rat |
| 1549838 | Bss4 | Bone structure and strength QTL 4 | 9.2 | | Bone structure and strength | Femoral midshaft moment of inertia | 5 | 113689301 | 158689301 | Rat |
| 7207481 | Bss106 | Bone structure and strength QTL 106 | 7.9 | | Bone strength | Femoral ultimate force | 5 | 113689301 | 158689301 | Rat |
| 7207486 | Bss109 | Bone structure and strength QTL 109 | | | Bone strength | Femoral energy to break | 5 | 113689301 | 158689301 | Rat |
| 7207488 | Bss110 | Bone structure and strength QTL 1 | 8.4 | | Bone strength | Femoral stiffness | 5 | 113689301 | 158689301 | Rat |
| 7207491 | Bss112 | Bone structure and strength QTL 112 | 7 | | Bone structure | Femoral midshaft cortical area | 5 | 113689301 | 158689301 | Rat |
| 1298089 | Scl14 | Serum cholesterol level QTL 14 | 5.8 | .0004 | Lipid level | cholesterol | 5 | 115772027 | 160772027 | Rat |
| 1598847 | Cm62 | Cardiac mass QTL 62 | 3.4 | | Cardiac mass | | 5 | 115772027 | 160772027 | Rat |
| 1581510 | Cm54 | Cardiac mass QTL 54 | 3.4 | .05 | Cardiac mass | left ventricle | 5 | 126963761 | 150236260 | Rat |
| 2293642 | Bss37 | Bone structure and strength QTL 37 | 4.64 | .0001 | Bone strength | | 5 | 126963761 | 157597184 | Rat |
| 724525 | Bp147 | Blood pressure QTL 147 | 4.3 | .0001 | Blood pressure | systolic | 5 | 132950669 | 173096209 | Rat |
| 1598819 | Bp292 | Blood pressure QTL 292 | 4.3 | | Blood pressure | systolic | 5 | 134356746 | 173096209 | Rat |
| 1598861 | Cm64 | Cardiac mass QTL 64 | 2.9 | | Cardiac mass | | 5 | 134356746 | 173096209 | Rat |
| 634349 | Bp139 | Blood pressure QTL 139 | | .001 | Blood pressure | systolic | 5 | 135877124 | 173096209 | Rat |
| 1331803 | Rf32 | Renal function QTL 32 | 2.798 | | Renal function | renal vascular resistance | 5 | 135900621 | 149757440 | Rat |
| 70156 | Niddm30 | Non-insulin dependent diabetes mellitus QTL 30 | 3.98 | | Glucose level | postprandial | 5 | 135910738 | 157584492 | Rat |
| 738018 | Anxrr4 | Anxiety related response QTL 4 | 5.1 | | Anxiety response | open field inner locomotion | 5 | 136765530 | 173096209 | Rat |
| 631505 | Bp103 | Blood pressure QTL 103 | 3.2 | | Blood pressure | systolic | 5 | 139690801 | 171801867 | Rat |
| 631562 | Apr2 | Acute phase response QTL 2 | 3.7 | | Alpha1 acid glycoprotein level | pristane induced | 5 | 142573432 | 173096209 | Rat |
| 61444 | Strs2 | Sensitivity to stroke QTL 2 | 4.7 | | Stroke susceptibility | latency until stroke | 5 | 142575172 | 173096209 | Rat |