RH127943 Marker Search Result - Rat Genome Database

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Marker: RH127943

Symbol: RH127943
Previously known as: AA859083; 
RGD ID: 5039850
Expected Size: 220 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.215106,667 - 106,887 (+)MAPPERmRatBN7.2
mRatBN7.21033,173,170 - 33,174,731 (+)MAPPERmRatBN7.2
Rnor_6.01034,153,473 - 34,155,033NCBIRnor6.0
Rnor_6.015148,807 - 149,026NCBIRnor6.0
Rnor_5.015144,153 - 144,372UniSTSRnor5.0
Rnor_5.01033,937,376 - 33,938,936UniSTSRnor5.0
RGSC_v3.41034,070,951 - 34,072,511UniSTSRGSC3.4
RGSC_v3.415104,836 - 105,055UniSTSRGSC3.4
Celera154,440,546 - 4,440,765UniSTS
Celera1032,559,329 - 32,560,889UniSTS
Cytogenetic Map10q21UniSTS
Cytogenetic Map15p16UniSTS
Is Marker For: Genes:   Rack1   Dlg5   LOC688387  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TCGGTATAGCCAGCAAACAGAG
Reverse Primer ATGGTGGAGACATCATCAATGC
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1308753Dlg5discs large MAGUK scaffold protein 51575786209735Rat
69229Rack1receptor for activated C kinase 1103316941533174896Rat

Nucleotide Sequences
RefSeq Transcripts NM_130734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC063809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U03390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
631531Iresp2Immunoglobin response QTL26.3blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)102291826836400810Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2298480Eau7Experimental allergic uveoretinitis QTL 70.0049uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)102795762634490668Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 305645 UniSTS
  688387 UniSTS
  83427 UniSTS
UniSTS 211253 UniSTS