RH127442 Marker Search Result - Rat Genome Database

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Marker: RH127442

Symbol: RH127442
Previously known as: AA818265; 
RGD ID: 5038978
Expected Size: 189 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23109,098,610 - 109,098,799 (+)MAPPERmRatBN7.2
Rnor_6.03114,090,158 - 114,090,346NCBIRnor6.0
Rnor_5.03120,630,370 - 120,630,558UniSTSRnor5.0
RGSC_v3.43108,930,777 - 108,930,965UniSTSRGSC3.4
Celera3107,996,859 - 107,997,047UniSTS
Cytogenetic Map3q35UniSTS
Is Marker For: Genes:   B2m  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GAATTCAGTGTGAGCCAGGATG
Reverse Primer CAAGTGTACTCTCGCCATCCAC
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2189B2mbeta-2 microglobulin3109095740109101764Rat

Nucleotide Sequences
RefSeq Transcripts NM_012512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide FQ210051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y00441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y08531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)396127817115665732Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3102200529115665732Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 24223 UniSTS
UniSTS 210752 UniSTS