RH127375 Marker Search Result - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Marker: RH127375

Symbol: RH127375
Previously known as: AA818031; RH140859; 
RGD ID: 5038862
Expected Size: 202 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23136,337,031 - 136,337,233 (+)MAPPERmRatBN7.2
mRatBN7.27129,758,363 - 129,758,565 (+)MAPPERmRatBN7.2
Rnor_6.07140,286,211 - 140,286,412NCBIRnor6.0
Rnor_6.03143,219,780 - 143,219,981NCBIRnor6.0
Rnor_5.03149,628,801 - 149,629,002UniSTSRnor5.0
Rnor_5.0X114,789,909 - 114,790,110UniSTSRnor5.0
RGSC_v3.43137,651,012 - 137,651,213UniSTSRGSC3.4
RGSC_v3.47137,355,452 - 137,355,653UniSTSRGSC3.4
Celera7126,248,838 - 126,249,039UniSTS
Celera3135,178,141 - 135,178,342UniSTS
Cytogenetic Map3q41UniSTS
Cytogenetic Map7q36UniSTS
Is Marker For: Genes:   Adcy6   Cst3  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TTACTGTCTCCTGGTGGGAACA
Reverse Primer GCTCCTTCCAGATCTACAGCGT
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2035Adcy6adenylate cyclase 67129742827129763922Rat
7673988Cst3-ps1cystatin C, pseudogene 17129757988129758485Rat
2432Cst3cystatin C3136336923136340796Rat

Nucleotide Sequences
RefSeq Transcripts NM_012837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC087591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X16957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 25289 UniSTS
  25307 UniSTS
UniSTS 210685 UniSTS