| 61357 | Bp38 | Blood pressure QTL 38 | 1.6 | .052 | Blood pressure | | 7 | 44698822 | 125481104 | Rat |
| 631504 | Cm27 | Cardiac mass QTL 27 | 3.45 | | Cardiac mass | left ventricle | 7 | 47865637 | 125399168 | Rat |
| 70173 | Niddm19 | Non-insulin dependent diabetes mellitus QTL 19 | 4.33 | .00005 | Glucose level | postprandial | 7 | 68162496 | 143002779 | Rat |
| 634331 | Pia17 | Pristane induced arthritis QTL 17 | 4.7 | | Joint/bone inflammation | arthritis severity | 7 | 78497123 | 137838800 | Rat |
| 1331728 | Bp214 | Blood pressure QTL 214 | 2.825 | | Blood pressure | mean arterial | 7 | 85089895 | 130953311 | Rat |
| 1331768 | Kidm10 | Kidney mass QTL 10 | 4.62096 | | Kidney mass | left kidney mass | 7 | 85089895 | 140651095 | Rat |
| 631529 | Tls2 | T-lymphoma susceptibility QTL 2 | 13.1 | .001 | T-lymphoma susceptibility | propylnitrosourea induced | 7 | 85090032 | 137838850 | Rat |
| 2317052 | Aia17 | Adjuvant induced arthritis QTL 17 | 2.13 | | Joint/bone inflammation | adjuvant induced | 7 | 87525274 | 132525274 | Rat |
| 1358891 | Bp265 | Blood pressure QTL 265 | 2.21 | | Blood pressure | post renin-angiotensin system block | 7 | 88583730 | 142441286 | Rat |
| 1358914 | Bp266 | Blood pressure QTL 266 | | | Blood pressure | post sympathetic nervous system block | 7 | 88583730 | 142441286 | Rat |
| 71114 | Niddm14 | Non-insulin dependent diabetes mellitus QTL 14 | 4.5 | | Glucose level | plasma glucose homeostasis | 7 | 90478161 | 135478161 | Rat |
| 2298475 | Eau6 | Experimental allergic uveoretinitis QTL 6 | | .0029 | Uvea inflammation | | 7 | 90478161 | 135478161 | Rat |
| 1558655 | Swd4 | Spike wave discharge measurement QTL 4 | 3.68 | .0002 | Spike wave discharge measurement | grading | 7 | 93320292 | 138320292 | Rat |
| 61428 | Scl3 | Serum cholesterol level QTL 3 | 3.2 | | Lipid level | cholesterol | 7 | 95054656 | 132141292 | Rat |
| 2299163 | Iddm34 | Insulin dependent diabetes mellitus QTL 34 | 2.71 | | Glucose level | insulin-dependent | 7 | 96517746 | 137757704 | Rat |
| 631687 | Hcas1 | Hepatocarcinoma susceptibility QTL 1 | 3.9 | .001 | Liver tumor susceptibility | nodule volume fraction | 7 | 96649133 | 137404381 | Rat |
| 1549899 | Stresp8 | Stress response QTL 8 | 4.37 | .0008 | Stress response | defensive burying - shocks | 7 | 97285400 | 142285400 | Rat |
| 2293703 | Bss48 | Bone structure and strength QTL 48 | 16.05 | .0001 | Bone structure | | 7 | 98036672 | 143002779 | Rat |
| 2300184 | Bmd53 | Bone mineral density QTL 53 | 5.4 | .0001 | Bone mineral density | | 7 | 98036672 | 143002779 | Rat |
| 731176 | Glom5 | Glomerulus QTL 5 | 2.5 | .0035 | Renal histology | | 7 | 103894800 | 143002779 | Rat |
| 1331731 | Bp216 | Blood pressure QTL 216 | 2.851 | | Blood pressure | mean arterial | 7 | 108021523 | 141116504 | Rat |
| 731174 | Uae23 | Urinary albumin excretion QTL 23 | 2.4 | .0042 | Renal function | urine albumin level | 7 | 112114092 | 143002779 | Rat |
| 1331748 | Bp215 | Blood pressure QTL 215 | 4.043 | | Blood pressure | time series calculation | 7 | 119049926 | 141116504 | Rat |
| 1357339 | Stl14 | Serum triglyceride level QTL 14 | 3.45 | .0001 | Lipid level | triglyceride | 7 | 119494698 | 141116327 | Rat |
| 1582240 | Sffal1 | Serum free fatty acids level QTL 1 | 3.4 | .0021 | Lipid level | free fatty acids | 7 | 123574473 | 131350792 | Rat |
| 631201 | Panci1 | Pancreas inflammation QTL 1 | 17.1 | .001 | Pancreas inflammation | score | 7 | 123574930 | 134614033 | Rat |
| 1300112 | Bp183 | Blood pressure QTL 183 | 3.51 | | Blood pressure | salt-loaded time series calculation | 7 | 124315012 | 141301748 | Rat |