BI277538 Marker Search Result - Rat Genome Database

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Marker: BI277538

Symbol: BI277538
Previously known as:
RGD ID: 5029649
Expected Size: 183 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2652,947,739 - 52,948,041 (+)MAPPERmRatBN7.2
mRatBN7.2695,636,962 - 95,637,145 (+)MAPPERmRatBN7.2
Rnor_6.0699,984,365 - 99,984,547NCBIRnor6.0
Rnor_6.0655,706,624 - 55,706,925NCBIRnor6.0
Rnor_5.0665,321,005 - 65,321,306UniSTSRnor5.0
Rnor_5.06109,378,949 - 109,379,131UniSTSRnor5.0
RGSC_v3.4654,941,318 - 54,941,619UniSTSRGSC3.4
RGSC_v3.4699,528,751 - 99,528,933UniSTSRGSC3.4
Celera694,055,031 - 94,055,213UniSTS
Celera652,090,030 - 52,090,333UniSTS
RH 3.4 Map6669.3UniSTS
Cytogenetic Map6q16UniSTS
Cytogenetic Map6q24UniSTS
Is Marker For: Genes:   Max   Lrrc72  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer ATGGAATCAACACCGACTGAGA
Reverse Primer CTTCCTCCTGTCCTGGAATTGT
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1560395Lrrc72leucine rich repeat containing 7265293538752995552Rat
41110432Max-ps2MYC associated factor X, pseudogene 265294876252950726Rat
11382383Rps26-ps5ribosomal protein S26, pseudogene 565298065552996561Rat
628877Sostdc1sclerostin domain containing 165305133653055510Rat
41059523LOC120093435small nucleolar RNA SNORA4865307013453070273Rat
40986010LOC120093463small nucleolar RNA SNORA1765311671453116830Rat
1359368CrppaCDP-L-ribitol pyrophosphorylase A65312026453397030Rat
9299213Chchd2l2-ps4coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 465330935553311115Rat
40964578Hnrnpa1-ps2heterogeneous nuclear ribonucleoprotein A1, pseudogene 265369794153700119Rat
41195695LOC120093493small nucleolar RNA U365380824353808325Rat
3079Meox2mesenchyme homeobox 265385676053917467Rat
2319740Exosc-ps1exosome component 4, pseudogene 165395086753951745Rat
1312038Agmoalkylglycerol monooxygenase65398623654317838Rat
41165480LOC120093298U6 spliceosomal RNA65422698154227085Rat
11398630LOC108351227uncharacterized LOC10835122765434308154383179Rat
11518989LOC108351363uncharacterized LOC10835136365438326654384851Rat
1563613Rps25l2ribosomal protein S25 like 265452133554521746Rat
2488Dgkbdiacylglycerol kinase, beta65464094855397210Rat
7669283Actg1-ps1actin, gamma 1, pseudogene 165472120154722310Rat
9263034LOC103692620thyroid hormone receptor-associated protein 3 pseudogene65483121154835676Rat
2323883Pebp1-ps2phosphatidylethanolamine binding protein 1, pseudogene 265554026455540821Rat
1312007Etv1ETS variant transcription factor 165559014955681784Rat
41312804Rplp0-ps9ribosomal protein lateral stalk subunit P0, pseudogene 965568605455686977Rat
41157524LOC120103524uncharacterized LOC12010352465595678756049486Rat
41034983LOC120093442small nucleolar RNA SNORA1765639963256399763Rat
2323695St13-ps2ST13, Hsp70 interacting protein, pseudogene 265643522256436810Rat
1305611Smarce1-ps10SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, pseudogene 1065650441056505749Rat
41392365LOC120093451small nucleolar RNA SNORA1765658492756585050Rat
41025079LOC120093443U2 spliceosomal RNA65660011356600288Rat
41263556LOC120093490U2 spliceosomal RNA65662950456629658Rat
1560073Rps10-ps21ribosomal protein S10, pseudogene 2165666905856669628Rat
40972876LOC12009324760S ribosomal protein L29-like65688837256888994Rat
1588211Phb2-ps3prohibitin 2, pseudogene 365698154956986759Rat
2152Arl4aADP-ribosylation factor like GTPase 4A65707949657084156Rat
735034Scinscinderin65710950057188123Rat
1587073Lsmem1leucine-rich single-pass membrane protein 165725172057261590Rat
2867Ifrd1interferon-related developmental regulator 165726939557317833Rat
1583856Zfp277zinc finger protein 27765738345457512785Rat
41008057LOC120093202uncharacterized LOC12009320265750914557509600Rat
1561724Dock4dedicator of cytokinesis 465751292957902597Rat
2323665Immp2linner mitochondrial membrane peptidase subunit 265807003558970165Rat
2323872H3f3l1H3.3 histone like 165809993058101667Rat
7500279LOC102552766uncharacterized LOC10255276665815077658186306Rat
41339141LOC120093204uncharacterized LOC12009320465819694858227730Rat
40934694LOC120093461small nucleolar RNA SNORA1765839618358396315Rat
41334056LOC120093203uncharacterized LOC12009320365841472558430740Rat
71066Lrrn3leucine rich repeat neuronal 365848906058520322Rat
41268906LOC120103525uncharacterized LOC12010352565940358259425212Rat
1589745Ndufa10l1NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10-like 165987981959881252Rat
9072809LOC103692621oligosaccharyltransferase complex subunit OSTC pseudogene66043133660453277Rat
41279995LOC120093283U6 spliceosomal RNA66060760760607713Rat
3070Dnajb9DnaJ heat shock protein family (Hsp40) member B966127038561276795Rat
41003040LOC120103526uncharacterized LOC12010352666127517661282214Rat
1583553Dnajb6-ps4DnaJ heat shock protein family (Hsp40) member B6, pseudogene 466129754961299049Rat
1311444Pnpla8patatin-like phospholipase domain containing 866132981061391736Rat
3209Nrcamneuronal cell adhesion molecule66140281361698536Rat
41173563LOC120093276U6 spliceosomal RNA66175955261759658Rat
1598017Gpatch4-ps1G patch domain-containing protein 4, pseudogene 166180238961803939Rat
11407073LOC108351229transformer-2 protein homolog alpha pseudogene66184100361841697Rat
1598278Eno1-ps32enolase 1, pseudogene 3266184662961847912Rat
1583855Gapdh-ps92Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 9266186594961866939Rat
1306117Stxbp6syntaxin binding protein 666192075662157405Rat
41192509LOC120093462small nucleolar RNA SNORA1766219361062193737Rat
40950765LOC120093319U7 small nuclear RNA66238648762386545Rat
41372374LOC120093491U2 spliceosomal RNA66251956662519704Rat
7593102LOC102555380uncharacterized LOC10255538066252587262555470Rat
7652149LOC102555435uncharacterized LOC10255543566257374162579908Rat
9317184LOC103692627uncharacterized LOC10369262766260211862606902Rat
11450428LOC108351230uncharacterized LOC10835123066260524662616196Rat
41268372LOC120093449small nucleolar RNA SNORA1766285928762859414Rat
41195602LOC120093317small nucleolar RNA SNORA73 family66305535063055553Rat
621345Nova1NOVA alternative splicing regulator 166378010563905567Rat
41200290LOC120093485U2 spliceosomal RNA66451313164513345Rat
41328288LOC120093502U4 spliceosomal RNA66469570864695834Rat
40947446LOC120093250uncharacterized LOC12009325066474904964779502Rat
40951447LOC120103529uncharacterized LOC12010352966495868964973053Rat
7725900LOC102556158uncharacterized LOC10255615866503448965134280Rat
1598277Kpna1-ps3karyopherin subunit alpha 1, pseudogene 366542390965426151Rat
41004139LOC120093468small nucleolar RNA SNORA1766583512565835255Rat
1334065Or5ak28-ps1olfactory receptor family 5 subfamily AK member 28, pseudogene 166621392966214582Rat
2320031LOC100364934Leydig cell tumor 10 kDa protein-like66633698966337899Rat
2323500Phgdh-ps1phosphoglycerate dehydrogenase, pseudogene 166664132866642516Rat
1559629Atp5mc1l2ATP synthase membrane subunit c locus 1 like 266665418766654763Rat
2619Foxg1forkhead box G166667479766677611Rat
41172264LOC120103531uncharacterized LOC12010353166668467466685883Rat
7619249LOC102546421uncharacterized LOC10254642166668963566699336Rat
40997044LOC120093455small nucleolar RNA SNORA1766684549766845624Rat
41135267LOC120093458small nucleolar RNA SNORA1766688136966881496Rat
7627887LOC102546496uncharacterized LOC10254649666690249166930836Rat
9219694LOC103692628uncharacterized LOC10369262866696117167055411Rat
41302933Gapdh-ps90Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 9066739692267441051Rat
620964Prkd1protein kinase D166772519368039002Rat
41257709LOC120103532uncharacterized LOC12010353266779498267868731Rat
7728058LOC102557478uncharacterized LOC10255747866844343768505774Rat
41010064LOC120093251uncharacterized LOC12009325166856912168571922Rat
41350299LOC120093284U6 spliceosomal RNA66862788368627990Rat
1310263G2e3G2/M-phase specific E3 ubiquitin protein ligase66876384768795305Rat
619828Scfd1sec1 family domain containing 166879581068874076Rat
1587060Ube2i-ps3ubiquitin-conjugating enzyme E2I, pseudogene 366880406168805440Rat
2323296Snrnp48-ps2small nuclear ribonucleoprotein U11/U12 subunit 48, pseudogene 266893614068948448Rat
41281687Arl1-ps1ADP-ribosylation factor like GTPase 1, pseudogene 166895551168962169Rat
1308536Cochcochlin66903113969045124Rat
621827Strn3striatin 366904777669134102Rat
1311990Ap4s1adaptor related protein complex 4 subunit sigma 166913340369174488Rat
1561653Hectd1HECT domain E3 ubiquitin protein ligase 166918142969268045Rat
41293354LOC120103536uncharacterized LOC12010353666919891369201280Rat
1561116Heatr5aHEAT repeat containing 5A66932186969419861Rat
1309138Dtd2D-aminoacyl-tRNA deacylase 266945014669456430Rat
1306830Gpr33-ps1G protein-coupled receptor 33, pseudogene 166947443569475440Rat
1307232NubplNUBP iron-sulfur cluster assembly factor like66955927869781254Rat
11440663LOC108351235tensin-2 pseudogene66959456869601783Rat
1595110Cers5-ps1ceramide synthase 5, pseudogene 166982385169830063Rat
1308507Arhgap5Rho GTPase activating protein 566997590470039299Rat
41103385LOC120093278U6 spliceosomal RNA67006837370068479Rat
40945147LOC120093279U6 spliceosomal RNA67006906070069166Rat
69412Akap6A-kinase anchoring protein 667018410170624369Rat
1307181Npas3neuronal PAS domain protein 367070277371527928Rat
41254020LOC120093508U6 spliceosomal RNA67081389370813999Rat
7629096LOC102547735uncharacterized LOC10254773567087483070899484Rat
41384656LOC120093424small nucleolar RNA SNORA2/SNORA34 family67109002471090159Rat
71019Egln3egl-9 family hypoxia-inducible factor 367165029771675766Rat
41293789Trnaa-agc62transfer RNA alanine (anticodon AGC) 6267169429071694370Rat
41212191LOC120093497U4 spliceosomal RNA67169935171699530Rat
41343341LOC120093379U1 spliceosomal RNA67170661771706776Rat
7578757LOC102547890uncharacterized LOC10254789067182556671832386Rat
1559672Timm23btranslocase of inner mitochondrial membrane 23B67184524471846339Rat
2322683Nkapd1-ps1NKAP domain containing 1, pseudogene 167189601971898777Rat
9129693LOC103692636uncharacterized LOC10369263667190298071916408Rat
2323006Rps10l1ribosomal protein S10-like 167203087672031430Rat
1559724Rps19-ps18ribosomal protein S19, pseudogene 1867206650372072009Rat
41227971LOC120093434small nucleolar RNA SNORA4867210130272101443Rat
1565821Sptssaserine palmitoyltransferase, small subunit A67214471472156130Rat
1309624EappE2F-associated phosphoprotein67216648672194357Rat
41195836LOC120093301U6 spliceosomal RNA67217547672175575Rat
7646071Cetn4-ps1centrin 4, pseudogene 167217718272181768Rat
41029885LOC120093291U1 spliceosomal RNA67219467172194834Rat
41303109LOC120093206uncharacterized LOC12009320667220087072202818Rat
41114950LOC120093357U1 spliceosomal RNA67220306672203228Rat
41074541LOC120093346U1 spliceosomal RNA67220576072205923Rat
41245801LOC120093302U1 spliceosomal RNA67221144572211608Rat
41140941LOC120093313U1 spliceosomal RNA67221868472218847Rat
41319468LOC120093324U1 spliceosomal RNA67222436972224532Rat
41367672LOC120093335U1 spliceosomal RNA67222704472227207Rat
7561334LOC102548522uncharacterized LOC10254852267222721772231374Rat
1304647Snx6sorting nexin 667223095072274157Rat
7646365LOC102548461uncharacterized LOC10254846167227414272290681Rat
40971021LOC120093210uncharacterized LOC12009321067230649372316083Rat
9167354LOC103695296glyceraldehyde-3-phosphate dehydrogenase pseudogene67232884872329825Rat
1306982Cfl2cofilin 267235566472359709Rat
1306199Baz1abromodomain adjacent to zinc finger domain, 1A67238970172512516Rat
11491526LOC108351236uncharacterized LOC10835123667249434372522266Rat
41278108LOC120093303U6 spliceosomal RNA67249442772494534Rat
13046242700097O09RiklRIKEN cDNA 2700097009 gene like67254216672587511Rat
621390Srp54asignal recognition particle 54A67258758472626878Rat
2323636Fam177a1family with sequence similarity 177, member A167263262872647553Rat
1309207Ppp2r3cprotein phosphatase 2, regulatory subunit B'', gamma67264702572670885Rat
1305089Prorpprotein only RNase P catalytic subunit67266965972762419Rat
61849Psma6proteasome 20S subunit alpha 667276553472796554Rat
3171NfkbiaNFKB inhibitor alpha67285871372861941Rat
1359133Aldoart2aldolase 1 A retrogene 267293982172941511Rat
1306949Insm2INSM transcriptional repressor 267297386172976453Rat
620642Ralgapa1Ral GTPase activating protein catalytic subunit alpha 167297743273252378Rat
2325062Ftl1l2ferritin light chain 1 like 267324261273243527Rat
4888535Mir3593microRNA 359367325264773252737Rat
7744426LOC102546497uncharacterized LOC10254649767326553073266513Rat
1306006Brms1lBRMS1 like transcriptional repressor67326667373300630Rat
40967547LOC120093292U6 spliceosomal RNA67335971173359813Rat
1598274Gapdh-ps103Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 10367348811273489095Rat
1598273Ldha-ps5lactate dehydrogenase A, pseudogene 567351843473519312Rat
41331265Ldha-ps26lactate dehydrogenase A, pseudogene 2667352805573528933Rat
41086662Ldha-ps27lactate dehydrogenase A, pseudogene 2767353767673538554Rat
11370304LOC108351238uncharacterized LOC10835123867371889173725872Rat
41335350LOC120093450small nucleolar RNA SNORA1767371998573720115Rat
41075203LOC120103538uncharacterized LOC12010353867376066973766166Rat
1306310MbipMAP3K12 binding inhibitory protein 167380813373825394Rat
7751922LOC102551688uncharacterized LOC10255168867388432173909296Rat
6489654LOC100911923uncharacterized LOC10091192367395425873994337Rat
3866Nkx2-1NK2 homeobox 167399660174001483Rat
7748644LOC102552092uncharacterized LOC10255209267399997874011751Rat
41393512LOC120093467small nucleolar RNA SNORA1767401621574016333Rat
1598272Pmpcb-ps2peptidase, mitochondrial processing subunit beta, pseudogene 267402462074043020Rat
1310629Nkx2-8NK2 homeobox 867408627474087977Rat
2321461Rpl15-ps2ribosomal protein L15, pseudogene 267411817574118794Rat
1560838Pax9paired box 967418674974203508Rat
621444Slc25a21solute carrier family 25 member 2167420343974702902Rat
7624969Alg11-ps2ALG11, alpha-1,2-mannosyltransferase, pseudogene 267425915874260776Rat
11452082LOC108351240uncharacterized LOC10835124067432347874333662Rat
41044899LOC120103539uncharacterized LOC12010353967465429674666802Rat
41305281Trnav-aac44transfer RNA valine (anticodon AAC) 4467469405574694135Rat
6504372Mipol1mirror-image polydactyly 167475529375090403Rat
1359636Prps1l3phosphoribosyl pyrophosphate synthetase 1-like 367475533174763493Rat
40963012LOC120093310U6 spliceosomal RNA67480579574805882Rat
2807Foxa1forkhead box A167509990775136534Rat
1560556Ttc6tetratricopeptide repeat domain 667513682775368176Rat
41155391LOC120093489U2 spliceosomal RNA67521655975216724Rat
1598271Rps6-ps8ribosomal protein S6, pseudogene 867529572875296526Rat
41033385LOC120093510U6 spliceosomal RNA67563707175637177Rat
1587663Ldha-ps17lactate dehydrogenase A, pseudogene 1767572705975728506Rat
3762Sstr1somatostatin receptor 167583229275836806Rat
1306232Clec14aC-type lectin domain containing 14A67588147075884612Rat
1586499G3bp1-ps7G3BP stress granule assembly factor 1, pseudogene 767629770776301640Rat
1586488Ddx21-ps10DExD-box helicase 21, pseudogene 1067639943576400992Rat
41050981LOC120093454U2 spliceosomal RNA67649533176495501Rat
1586460Mrto4-ps8mRNA turnover 4, ribosome maturation factor, pseudogene 867660827276609088Rat
41067375Prelid1-ps3PRELI domain containing 1, pseudogene 367661641576617250Rat
1586428Eif4a1-ps8eukaryotic translation initiation factor 4A1, pseudogene 867662386676625179Rat
1309103Sec23aSec23 homolog A, COPII coat complex component67665879376706125Rat
620842Gemin2gem (nuclear organelle) associated protein 267670642476721154Rat
1588546Cyp51a1-ps1cytochrome P450, family 51, subfamily a, polypeptide 1, pseudogene 167672542176727572Rat
41148093U2l3U2 spliceosomal RNA like 367673093876731128Rat
1309325Trappc6btrafficking protein particle complex subunit 6B67674089876752035Rat
1597086Pnnpinin, desmosome associated protein67675813876766451Rat
6488546Mia2MIA SH3 domain ER export factor 267678750876885246Rat
41035462Snora26l1small nucleolar RNA, H/ACA box 26 like 167682355176823672Rat
1307543Fbxo33F-box protein 3367690061976934232Rat
9159722LOC103695309glyceraldehyde-3-phosphate dehydrogenase pseudogene67706861277069628Rat
41087372LOC120093280U6 spliceosomal RNA67723686577236971Rat
41111149LOC120093440small nucleolar RNA SNORA1767746342877463557Rat
41209044Hsp90ab1-ps16heat shock protein 90 alpha family class B member 1, pseudogene 1667750202177511120Rat
1563850Akr1b8-ps2aldo-keto reductase family 1, member B8, pseudogene 267756972077571967Rat
41271388LOC120093314U6 spliceosomal RNA67757123077571335Rat
1598269Paics-ps4phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase, pseudogene 467768566177687084Rat
40978870LOC120093300U6 spliceosomal RNA67775521977755326Rat
1598344Pcna-ps1proliferating cell nuclear antigen, pseudogene 167779210877793917Rat
1598268Nt5c2-ps45'-nucleotidase, cytosolic II, pseudogene 467787813777879911Rat
11455066LOC108351364uncharacterized LOC10835136467812468678134031Rat
1582962Apoo-ps1apolipoprotein O, pseudogene 167885871878859404Rat
1582948Sec13-ps3SEC13 homolog, nuclear pore and COPII coat complex component, pseudogene 367890155878903012Rat
1582931Pcbp2-ps9poly(rC) binding protein 2, pseudogene 967916269279163639Rat
2322884Entr1l1endosome associated trafficking regulator 1 like 167933121079332658Rat
1309357Lrfn5leucine rich repeat and fibronectin type III domain containing 567946640379822821Rat
1560665Timm17al1translocase of inner mitochondrial membrane 17a-like 167963705479637877Rat
41016925U3l1small nucleolar RNA U3 like 167965620179656389Rat
41370298Ppa2-ps1inorganic pyrophosphatase 2, pseudogene67985657179860348Rat
40998590LOC120093311U6 spliceosomal RNA67990149179901594Rat
40957535LOC120093486U2 spliceosomal RNA68021546380215666Rat
1597397Cct6a-ps11chaperonin containing Tcp1, subunit 6A (zeta 1), pseudogene 1168044267280487379Rat
2319091Gemin8-ps1gem (nuclear organelle) associated protein 8, pseudogene 168056394380564624Rat
2322517Fam167b-ps1family with sequence similarity 167, member B, pseudogene 168062965380630098Rat
2322466Trim13-ps1tripartite motif-containing 13, pseudogene 168069387880695270Rat
41194368LOC120093500U4 spliceosomal RNA68086314280863276Rat
9242302LOC103692643uncharacterized LOC10369264368237426182378710Rat
1561721Fscbfibrous sheath CABYR binding protein68252784982530641Rat
41179368LOC120093436small nucleolar RNA SNORA1768277764282777773Rat
41359618LOC120093501U4 spliceosomal RNA68280110282801218Rat
11387951Ppia-ps6peptidylprolyl isomerase A, pseudogene 668281357082814071Rat
1596109Eif2d-ps2eukaryotic translation initiation factor 2D, pseudogene 268286678382868664Rat
1307621C6h14orf28similar to human chromosome 14 open reading frame 2868296530482973942Rat
1311326Klhl28kelch-like family member 2868298736083018971Rat
1310474Togaram1TOG array regulator of axonemal microtubules 168301902583083343Rat
1308702Prpf39pre-mRNA processing factor 3968308898183113826Rat
41104710Snord127small nucleolar RNA, C/D box 12768310859683108680Rat
1304992Fkbp3FKBP prolyl isomerase 368311388583125500Rat
1307897FancmFA complementation group M68312690383180455Rat
1594757Mis18bp1MIS18 binding protein 168318249783231978Rat
1597505Faul1FAU ubiquitin like and ribosomal protein S30 fusion like 168322875183229261Rat
6497625Vdac1-ps15voltage-dependent anion channel 1, pseudogene 1568327846983279491Rat
41120331LOC120093256uncharacterized LOC12009325668331404683353136Rat
41156721LOC120093430small nucleolar RNA SNORA4868340667483406809Rat
40958936LOC120093448small nucleolar RNA SNORA1768351670483516832Rat
41023230LOC120093444small nucleolar RNA SNORA1768369407183694202Rat
41316972LOC120093257uncharacterized LOC12009325768417249884177501Rat
1593470Gemin8-ps8gem (nuclear organelle) associated protein 8, pseudogene 868427366484274511Rat
1592352H2az2l2H2A.Z histone variant 2 like 268432180184322513Rat
11509237LOC108351242uncharacterized LOC10835124268432810184449141Rat
11488287LOC108351243uncharacterized LOC10835124368444920884471178Rat
1305913Rpl10lribosomal protein L10 like68454477184545791Rat
41061609LOC120093487U2 spliceosomal RNA68471415384714319Rat
735131Mdga2MAM domain containing glycosylphosphatidylinositol anchor 268474642285608640Rat
41088860LOC120093460small nucleolar RNA SNORA1768486751684867654Rat
9378291Mterf1-ps4mitochondrial transcription termination factor 1, pseudogene 468507777585097837Rat
41070124Snora32small nucleolar RNA, H/ACA box 3268528818185288298Rat
41343863LOC120093465U2 spliceosomal RNA68601876886018953Rat
1592266Rpl11-ps10ribosomal protein L11, pseudogene 1068621246286220022Rat
41020689LOC120103542uncharacterized LOC12010354268650696286535785Rat
2318430Alad-ps1aminolevulinate dehydratase, pseudogene 168691994486921014Rat
41174787Snord13l1small nucleolar RNA, C/D box 13 like 168714123087141336Rat
2324062LOC100362796cDNA sequence BC048679-like68729662687331624Rat
1559639Rpl10al1ribosomal protein L10A like 168734960487350328Rat
6494851Smim12-ps1small integral membrane protein 12, pseudogene 168735379387354855Rat
41374274LOC120103543uncharacterized LOC12010354368739378087415424Rat
1308005Tigar-ps1TP53 induced glycolysis regulatory phosphatase, pseudogene 168750952187511891Rat
6501756Gsta4-ps2glutathione S-transferase alpha 4, pseudogene 268754048887541411Rat
41032403Rps8-ps6ribosomal protein S8, pseudogene 668761771287619541Rat
3596Rps29ribosomal protein S2968763522987636627Rat
8157638Rn7sl1RNA component of signal recognition particle 7SL168763680887637106Rat
1589026Lrr1leucine rich repeat protein 168764319587651894Rat
621156Rpl36al1ribosomal protein L36A like 168765480887656202Rat
620098Mgat2alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase68765636087658849Rat
1310311Dnaaf2dynein, axonemal, assembly factor 268766110187670267Rat
1308211Klhdc1kelch domain containing 168767018287765431Rat
1311962Pole2DNA polymerase epsilon 2, accessory subunit68767470287712723Rat
7644584LOC102547663transcription factor BTF3-like68776203787762866Rat
1306504Klhdc2kelch domain containing 268777718387791609Rat
2315525Nemfnuclear export mediator factor68779165087835826Rat
14398595Mir3084a-4microRNA mir-3084a-468781508487815152Rat
621279Arf6ADP-ribosylation factor 668785374287854890Rat
7658903LOC102548223uncharacterized LOC10254822368793903487952758Rat
7564407LOC102548030uncharacterized LOC10254803068794030987945176Rat
41235353LOC120103545uncharacterized LOC12010354568795605487974828Rat
7565188Vcpkmtvalosin containing protein lysine methyltransferase68803648588042151Rat
620435Sos2SOS Ras/Rho guanine nucleotide exchange factor 268804296688156140Rat
2320876Acp1-ps1acid phosphatase 1, pseudogene 168806492388066299Rat
9299214LOC103692654chloride intracellular channel protein 4 pseudogene68814629188151998Rat
1306250L2hgdhL-2-hydroxyglutarate dehydrogenase68816442988205585Rat
1359208Dmac2ldistal membrane arm assembly component 2 like68820558088223934Rat
1305080Cdkl1cyclin dependent kinase like 168822415488273434Rat
7625633LOC102548655uncharacterized LOC10254865568824471488246140Rat
1562028Map4k5mitogen-activated protein kinase kinase kinase kinase 568828408788377118Rat
1359232Atl1atlastin GTPase 168837716888475242Rat
1307253Sav1salvador family WW domain containing protein 168847853688500121Rat
1597025Smarce1-ps5SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, pseudogene 568852027888524964Rat
1306492Ninninein68852540588627710Rat
1303145Abhd12babhydrolase domain containing 12B68866862788696435Rat
620687Pyglglycogen phosphorylase L68869759888740260Rat
621540Trim9tripartite motif-containing 968875682488856588Rat
7653006LOC102549102uncharacterized LOC10254910268885666188887580Rat
1586354Snx7-ps1sorting nexin 7, pseudogene 168893116388934114Rat
7513588LOC102551922uncharacterized LOC10255192268895437088960566Rat
1308455Tmx1thioredoxin-related transmembrane protein 168896069188971744Rat
41328006LOC120103546uncharacterized LOC12010354668906754789082421Rat
41278504LOC120093504U4 spliceosomal RNA68906885389069001Rat
7741692LOC102552060uncharacterized LOC10255206068914475889147891Rat
727810Frmd6FERM domain containing 668934598389419579Rat
41199209Snord45l1small nucleolar RNA, C/D box 45 like 168941468289414752Rat
41067405Trnaa-agc24transfer RNA alanine (anticodon AGC) 2468944089989440979Rat
1306515Actr10actin related protein 1068944614189472350Rat
11391162Trnak-cuu9transfer RNA lysine (anticodon CUU) 968947829889478370Rat
61844Psma3proteasome 20S subunit alpha 368948374189503775Rat
1307442Arid4aAT-rich interaction domain 4A68952245989593868Rat
1586305Tomm20ltranslocase of outer mitochondrial membrane 20 like68959401689612070Rat
621656Timm9translocase of inner mitochondrial membrane 968961009489622924Rat
1585176Kiaa0586KIAA0586 homolog68962271189725951Rat
1564008Dact1dishevelled-binding antagonist of beta-catenin 168979067689818254Rat
1559545RGD1559545similar to ATPase inhibitory factor 168982191689842882Rat
41206585LOC120093507U6 spliceosomal RNA68993071789930823Rat
7709349LOC102553798uncharacterized LOC10255379869000503790063921Rat
9084011LOC10369265340S ribosomal protein SA pseudogene69011930790120185Rat
41372328LOC120093260uncharacterized LOC12009326069029469090296402Rat
11500716LOC108351250uncharacterized LOC10835125069032156390324236Rat
1305119Daam1dishevelled associated activator of morphogenesis 169038954490550114Rat
40977532LOC120103547uncharacterized LOC12010354769057634790580724Rat
727844Gpr135G protein-coupled receptor 13569062753390630661Rat
1305721L3hypdhtrans-L-3-hydroxyproline dehydratase69063631090647106Rat
11457500LOC10835125360S ribosomal protein L9 pseudogene69064722690647925Rat
1308917JkampJNK1/MAPK8-associated membrane protein69064804390661985Rat
1560894Ccdc175coiled-coil domain containing 17569066194890745015Rat
620986Rtn1reticulon 169076321290983436Rat
41326578Ppid-ps7peptidylprolyl isomerase D, pseudogene 769080428990850500Rat
11472163Rpl36a-ps20ribosomal protein L36A, pseudogene 2069100452191004960Rat
1565716Lrrc9leucine rich repeat containing 969101773991095847Rat
7695433LOC102549502uncharacterized LOC10254950269110387691124774Rat
1582892Pcnx4pecanex 469112506391170423Rat
41343659LOC120093108dehydrogenase/reductase SDR family member 7-like69119740591207825Rat
41049039Pcnx4l1pecanex 4 like 169125465791258779Rat
40988969LOC120093316small nucleolar RNA SNORA73 family69126560891265811Rat
1308036Dhrs7l1dehydrogenase/reductase (SDR family) member 7-like 169128920091312010Rat
1565002Dhrs7dehydrogenase/reductase 769133225991347856Rat
1598264Ube2e3-ps1ubiquitin-conjugating enzyme E2E 3, pseudogene 169135235091352964Rat
2319136Micos10l1mitochondrial contact site and cristae organizing system subunit 10 like 169136525091365507Rat
41236256LOC120103550uncharacterized LOC12010355069142876991442772Rat
3373Ppm1aprotein phosphatase, Mg2+/Mn2+ dependent, 1A69143909491486139Rat
11454361LOC108351251uncharacterized LOC10835125169148942091503040Rat
1559456Six6os1Six6 opposite strand transcript 169157918591615183Rat
40927049LOC120093488U2 spliceosomal RNA69160922691609398Rat
1310497Six6SIX homeobox 669163456891639548Rat
11360540Rpl35al8ribosomal protein L35A like 869164430291644739Rat
1597353Rpl23al7ribosomal protein L23A like 769170727191707812Rat
11515855LOC108351257uncharacterized LOC10835125769172975191740470Rat
620906Six1SIX homeobox 169174673991751975Rat
1306726Six4SIX homeobox 469180232891816002Rat
628874Mnat1MNAT1 component of CDK activating kinase69181470391971945Rat
40946442LOC120093470small nucleolar RNA SNORA1769185127491851333Rat
7641929Rabggtb-ps1Rab geranylgeranyltransferase subunit beta, pseudogene 169190857391913048Rat
1306567Trmt5tRNA methyltransferase 569196355891987660Rat
1310330Slc38a6solute carrier family 38, member 669198765292076416Rat
1582926Rpl26-ps13ribosomal protein L26, pseudogene 1369201780192018276Rat
41215294Rpl26-ps4ribosomal protein L26, pseudogene 469206709892067681Rat
41338597LOC120103552uncharacterized LOC12010355269210173992105881Rat
7563444LOC102550345uncharacterized LOC10255034569215313792157129Rat
1308732Tmem30btransmembrane protein 30B69225162692254702Rat
621888Prkchprotein kinase C, eta69229200092490663Rat
61928Hif1ahypoxia inducible factor 1 subunit alpha69262405992669262Rat
41369745LOC120103553uncharacterized LOC12010355369263794692672153Rat
1304671Snapc1small nuclear RNA activating complex, polypeptide 169268478592710772Rat
7643655Tmem183a-ps2transmembrane protein 183A, pseudogene 269268808192689176Rat
1564654Syt16synaptotagmin 1669272141592972140Rat
7735797LOC102550910uncharacterized LOC10255091069287743392904513Rat
11407250LOC108351259uncharacterized LOC10835125969298123392987867Rat
7582340LOC102551114uncharacterized LOC10255111469298790693002006Rat
621417Kcnh5potassium voltage-gated channel subfamily H member 569361517493908107Rat
1310528Rhojras homolog family member J69403530794117642Rat
1359264Gphb5glycoprotein hormone subunit beta 569412996894134585Rat
1305657Ppp2r5eprotein phosphatase 2 regulatory subunit B', epsilon69416884694317872Rat
41319232LOC120093261uncharacterized LOC12009326169433207794334223Rat
1307393Wdr89WD repeat domain 8969435046894382085Rat
41189254LOC120103554uncharacterized LOC12010355469438221594395832Rat
727829Sgpp1sphingosine-1-phosphate phosphatase 169442533994446534Rat
41188210Trnaa-agc97transfer RNA alanine (anticodon AGC) 9769449270394492783Rat
1305248Syne2spectrin repeat containing nuclear envelope protein 269453708894848085Rat
41159797LOC120103555uncharacterized LOC12010355569483906194841971Rat
2582Esr2estrogen receptor 269485843894909630Rat
1560347Tex21testis expressed 2169493138894969409Rat
7712380Rpl11-ps7ribosomal protein L11, pseudogene 769494420294944813Rat
708531Mthfd1methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 169497786295045375Rat
620829Akap5A-kinase anchoring protein 569505152795061075Rat
735076Zbtb25zinc finger and BTB domain containing 2569507069995095888Rat
1303095Zbtb1zinc finger and BTB domain containing 169509683895125811Rat
40982521LOC120103556uncharacterized LOC12010355669511208995125645Rat
620664Hspa2heat shock protein family A (Hsp70) member 269512850495131281Rat
1309051Ppp1r36protein phosphatase 1, regulatory subunit 3669513852695159102Rat
7661508LOC102556012uncharacterized LOC10255601269516301095171054Rat
1562381Rps17l1ribosomal protein S17 like 169523656595237253Rat
1308089Plekhg3pleckstrin homology and RhoGEF domain containing G369526575695308952Rat
1303243Sptbspectrin, beta, erythrocytic69531034295437221Rat
1305116Churc1churchill domain containing 169546448895485208Rat
41174745LOC120093305U6 spliceosomal RNA69547414695474248Rat
727780Gpx2glutathione peroxidase 269549358995496877Rat
735172Rab15RAB15, member RAS oncogene family69549958495524073Rat
620119Fntbfarnesyltransferase, CAAX box, subunit beta69553654095619587Rat
621101MaxMYC associated factor X69563685995662204Rat

Nucleotide Sequences
GenBank Nucleotide BC099778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)66304056271636266Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)67222764181132889Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)683190345106747639Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)689762877106752806Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 298963 UniSTS
  60661 UniSTS
UniSTS 243787 UniSTS