RH125916 Marker Search Result - Rat Genome Database

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Keyword

General

Marker: RH125916

Symbol:

RH125916

Also known as:

Expected Size:

253 (bp)

Position

Map	Chr	Position	Source
Rat Cytogenetic Map	4	q34	UniSTS
RGSC Genome Assembly v5.0	4	185,693,513 - 185,693,765	UniSTS
RGSC Genome Assembly v3.4	4	122,597,898 - 122,598,150	UniSTS
Rat Celera Assembly	4	109,929,361 - 109,929,613	UniSTS

Is Marker For:

Genes: Sec61a1

Model

Launch Genome Browser (GBrowse) for Chr4:122597898..122598150

Annotation

References - curated

Strains and Sequence

Sequence

Region

Genes in Region (RGSC Genome Assembly v3.4)

Nucleotide Sequences

QTLs in Region (RGSC Genome Assembly v3.4)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303168	Bp330	Blood pressure QTL 330	4.25	.017	Blood pressure		4	456799	149181446	Rat
2316958	Gluco58	Glucose level QTL 58	10		Glucose level	postprandial	4	6690606	185398530	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		Hypothalamic-pituitary-adrenal axis	corticosterone post-stress	4	8819982	149560340	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		Mammary tumor susceptibility	estradiol-induced	4	41729583	159115617	Rat
1354612	Foco1	Food consumption QTL 1	8.87		Consumption level	food intake	4	41729771	151158666	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		Consumption level	saline intake	4	41729771	151158666	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	.006	Renal pathology		4	43686352	149560340	Rat
1298082	Stresp4	Stress response QTL 4			Hormone level	corticosterone	4	47889730	149560340	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		Consumption level	alcohol preference	4	54828166	152570244	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	.0001	Consumption level	alcohol preference	4	54879077	127941994	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	.000016	Consumption level	saccharin preference	4	58421110	158108528	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	.00015	Consumption level	alcohol preference	4	58421110	158108528	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	.00003	Consumption level	alcohol preference	4	58421110	158108528	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		Joint/bone inflammation	inflammation score	4	60974346	130228614	Rat
1641919	Alc22	Alcohol consumption QTL 22		.0005	Consumption level	alcohol preference	4	62832008	127941994	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			Glucose level		4	63276741	160891592	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		.0003	Uvea inflammation score		4	69183301	134858710	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	.0001	Lipid level	triglyceride	4	72160227	134858710	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		Joint/bone inflammation	arthritis severity	4	73972453	133939659	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		Joint/bone inflammation	streptococcal cell wall induced	4	73972453	154937227	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	.0003	Liver tumor resistance	nodule volume	4	78035196	135074488	Rat
738015	Pia9	Pristane induced arthritis QTL 9	4.5	.048	Joint/bone inflammation	arthritis severity	4	81916057	126916057	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		Gland mass	pituitary	4	82700691	182307104	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		X-ray sensitivity		4	82861630	155893772	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		X-ray sensitivity		4	84355208	131969855	Rat
1582232	Gluco25	Glucose level QTL 25	3.6	.0023	Glucose level	uptake	4	84886545	151158853	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	.02	Glucose level	uptake	4	85014031	171204531	Rat
1578662	Bss15	Bone structure and strength QTL 15	19.6		Bone structure	femoral neck width	4	89539438	134539438	Rat
1578670	Bss14	Bone structure and strength QTL 14	16.4		Bone structure	femoral neck trabecular area	4	89539438	134539438	Rat
1578655	Bmd11	Bone mineral density QTL 11	11		Bone mineral density	femoral neck total vBMD	4	93201451	138201451	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		Anxiety response		4	93498821	171204377	Rat
631689	Scl4	Serum cholesterol level QTL 4	1.9	.008	Lipid level	cholesterol	4	96867443	141867443	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		Joint/bone inflammation	type II collagen induced	4	104415843	149415843	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		Liver tumor resistance	nodule number	4	106554769	171204531	Rat
6478680	Anxrr29	Anxiety related response QTL 29		.00092	Anxiety response	open field inner locomotion	4	106808891	151808891	Rat
6478740	Anxrr39	Anxiety related response QTL 39		.07528	Anxiety response	open field inner locomotion	4	106808891	151808891	Rat
2302049	Pia32	Pristane induced arthritis QTL 32	5.1	.001	Joint/bone inflammation	pristane induced	4	107728559	152728559	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	.0001	Renal function	urine albumin level	4	108641841	153641841	Rat
1331759	Hrtrt13	Heart rate QTL 13	3.54628		Heart rate		4	111754988	172369380	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		Bone structure	Femoral midshaft cortical area	4	112039347	157039347	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		Bone structure	Femoral midshaft moment of inertia	4	112039347	157039347	Rat
6478760	Anxrr45	Anxiety related response QTL 45		.06717	Anxiety response	response in light-dark box	4	113136999	158136999	Rat
6478763	Anxrr46	Anxiety related response QTL 46		.07428	Anxiety response	response in light-dark box	4	113136999	158136999	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		Renin concentration	serum	4	115896404	160896404	Rat
1300116	Hrtrt5	Heart rate QTL 5	3.76		Heart rate	salt-loaded	4	117887605	154283969	Rat
724535	Cm18	Cardiac mass QTL 18	2.6		Cardiac mass		4	121375269	166375269	Rat
2293840	Kiddil9	Kidney dilation QTL 9	2.9		Renal pathology	kidney dilation	4	122550935	151158853	Rat

Additional Information

External Database Links

More on RH125916
	Genome Browser
	Ensembl
	NCBI

RGD Object Information
RGD ID:	5028663
Created:	2011-03-02
Species:	Rattus norvegicus
Last Modified:	2013-05-16
Status:	ACTIVE