D18Rat147 Marker Search Result - Rat Genome Database

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Marker: D18Rat147

Symbol: D18Rat147
Previously known as: R0330-D09; oxsts9957; 
RGD ID: 43112
Expected Size: 236 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21811,719,001 - 11,719,218 (+)MAPPERmRatBN7.2
Rnor_6.01812,053,943 - 12,054,159NCBIRnor6.0
Rnor_5.01811,851,810 - 11,852,026UniSTSRnor5.0
RGSC_v3.41812,171,531 - 12,171,748RGDRGSC3.4
RGSC_v3.41812,171,532 - 12,171,748UniSTSRGSC3.4
RGSC_v3.11812,198,178 - 12,198,394RGD
Celera1811,734,791 - 11,735,007UniSTS
RH 3.4 Map18133.1RGD
RH 3.4 Map18133.1UniSTS
RH 2.0 Map18759.5RGD
SHRSP x BN Map184.77RGD
Cytogenetic Map18p12UniSTS
Is Marker For: Genes:   Dsg4  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer CCCATGGTTGAGCATGCTAT
Reverse Primer TACGGGGGTCATATTTTCCA
 
Template 
ATAATGGCAGAGCAGGCATTTGAGTTGGCCTGGTGTTTGGGGTAGACTGTCTAGAACAGCAAGC
AAACAGCACTTTCCGGCAGTTTACTAACCCATGGTTGAGCATGCTATATAGGGCCTTAAATGTA
AACACAGAGAAATAATATGTGCCCAAGTAACCATTTAAAGAAATTCTTTTATNCATTGTTTTAT
GTGGAAATTAACTTTTATTTTCATGATTTTGTGTGTGTTATGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTATTTGTGTGGTATATGAGTGTGTGTATAGAATCTTGGAAAATATGAC
CCCCGTATCTATTATACAAGGGGTACCGAGTCTCGAATTCGTAATCATGGTCATAGCTGTTTCC
TGTGTGAAATTGTTATCCGCTGCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAA
AGCCTGGGGTGCCTAATGAGTGAGCAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCC
AGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTT
GCGTATTGGGCGCCAGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTT
CACCGCCTGGCCCTGAGAGAGTTGCGCAAGCGGTCCACGCTGGTTTGCCCCAGCAGGCGAAAAT
CCTGTTTGATGGTGGNCGAAATCGCAAAATCCTTATAATCANAGAATAGCCGGATANGTGAGTG
TGTTCATTGGACAGATCATATAAGACGTGCTCACGTCAGGGGNAACGTTTAGGGAGNCACTAGT
GACNCNCAAC

Region

Nucleotide Sequences
GenBank Nucleotide JH619154.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18679125112205285Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18679125112205285Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18679125112205285Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18679125112205285Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18679125112205285Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 291754 UniSTS
UniSTS 226936 UniSTS