D14Rat125 Marker Search Result - Rat Genome Database

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Marker: D14Rat125

Symbol: D14Rat125
Previously known as: R0352-A09; oxsts9543; 
RGD ID: 43024
Expected Size: 354 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21470,206,767 - 70,207,113 (+)MAPPERmRatBN7.2
Rnor_6.01474,853,413 - 74,853,758NCBIRnor6.0
Rnor_5.01474,847,017 - 74,847,362UniSTSRnor5.0
RGSC_v3.41475,398,732 - 75,399,078RGDRGSC3.4
RGSC_v3.41475,398,733 - 75,399,078UniSTSRGSC3.4
RGSC_v3.11475,401,123 - 75,401,469RGD
Celera1469,119,167 - 69,119,569UniSTS
SHRSP x BN Map1436.03RGD
SHRSP x BN Map1436.03UniSTS


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CAGGAGATGAAGGTGCCTGT
Reverse Primer CCTTTAACAATCGGAGTGTGC
 
Template 
CATNCCATNCAGGTCAGANTCATAGAGGATCCCCTGGCGACCTGTCTCAGGAGATGAAGGTGCC
TGTTGCCAAGTCTAATGACCCGAGTTCAATTTCAGGCTTTCACTTAGTGGAAAGAGAGAACCAG
TTCTACTACATTATCCTCTGACTTCCCACAAATGGGCCATGCTATGTCATGCTAATGGCAGACA
CACACACACACACACACACACACACACACACACACACACAAAGATACACAAAGCCATAGACACA
TACACATGGCCGACATGAAGACAGACAAACACAGACATGCTCATGGACACACACAAACACAGAC
ACACAGAGAGACACAGCCACATGGCAAATAAATTTAAAGTGTAATTTAAAAATTAGAACAGCAC
ACTCCGATTGTTAAAGGTTATGATGAGTAAAGAGAGAGGAGATGACTCTCAGATAGTAGACCGT
GTGAGGGTACGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCC
GCTCACAATTCCACACAACATANGAGCCGGAAGCATAAAGTGTAAAGCCGGGGTGCTAATGAGT
GAGNTAACTCACATTAATTGCGTTGGCTCATGCCCGTTTCCGTCGGGAAACTGTCGTGCAGCTG
CTTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTGCGTATTGGGCGCAGGTGGTTTTTTTTC
ANAGTGAGAGGGCNAGTGATTGCCCTCACGCTGGCCTGNAGAGTGCGCANGGTCANNGTTGCCA
GNNNAATCTGTTATGGGGTCGANTGGAATCCTTAATCAAGATGNGNNNGGTGNNTGTCC

Region

Nucleotide Sequences


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat


Additional Information

Database Acc Id Source(s)
UniSTS 226625 UniSTS