D1Rat388 Marker Search Result - Rat Genome Database

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Marker: D1Rat388

Symbol: D1Rat388
Previously known as: R0314-D02; oxsts10253; 
RGD ID: 42443
Expected Size: 219 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,086,468 - 8,086,692 (+)MAPPERmRatBN7.2
Rnor_6.017,855,813 - 7,856,036NCBIRnor6.0
Rnor_5.019,482,668 - 9,482,891UniSTSRnor5.0
RGSC_v3.418,503,976 - 8,504,199UniSTSRGSC3.4
RGSC_v3.418,503,976 - 8,504,199RGDRGSC3.4
RGSC_v3.118,503,976 - 8,504,199RGD
Celera16,572,802 - 6,573,025UniSTS
SHRSP x BN Map16.99UniSTS
SHRSP x BN Map16.99RGD
Cytogenetic Map1p13UniSTS
Is Marker For: Genes:   Aig1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GAGTGAAGAGATGCGGAAGG
Reverse Primer GAAACTGCTCTGGTCTTCGG
 
Template 
CCCTGAACAGAGCATCCAAACATCTGCATATTCAACCCCTAACCTTCAAGGAGTGAAGAGATGC
GGAAGGGCTCTTAGCAACTCAGCACGCTTAGAGGATACAAAACCAACAACTGCTAGAGTGGCGG
CCAGTGTACTCCAGTTTCTCTGATTACTGTCTGTGTGTTGTACATGTGTGTGGTGCATGAACAG
TAATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGAGCCCTTACATGTATACTCCGAAGA
CCAGAGCAGTTTCTCAGGGGTACCGAGTCTTCGAATTCGTAATCATGGTTCATAGNTGTTTTCC
TGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAA
GCCTGGGGTGCCTAATGAGTGAGTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCA
GTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTG
CGTATTGGGCGCCAGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTC
ACCGCCTGGCCCGAGAGAGTTGCAGCAAGCGGTCCAGCGGTTTGCCCCAGCAGGCGAAAATCCT
GTTTGATGGTGGTTCCGAATCGGCAAATCCTATANTCAAAGAATAGCCGAGATAGGTTGAGTGT
TGTTCAGTNGGAACNGAGTCNTATANGACGTGNTCCACGTNNNGGNNANAACGCTATNGGGGAN
GCATAGTNNNTCNCANTCAGTTTTGGGGNGANNCNNNNNTANNGGACCNAAGGANC

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1562920Aig1androgen-induced 1180464308269276Rat

Nucleotide Sequences
GenBank Nucleotide JH612201.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1416280711481482Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 292486 UniSTS
UniSTS 227173 UniSTS