D16Rat112 Marker Search Result - Rat Genome Database

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Marker: D16Rat112

Symbol: D16Rat112
Previously known as: R0108-D06; oxsts9731; 
RGD ID: 42409
Expected Size: 246 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.216110,590 - 110,831 (+)MAPPERmRatBN7.2
Rnor_6.016778,415 - 778,655NCBIRnor6.0
Rnor_5.016773,329 - 773,569UniSTSRnor5.0
RGSC_v3.41664,718 - 64,959RGDRGSC3.4
RGSC_v3.41664,719 - 64,959UniSTSRGSC3.4
RGSC_v3.11664,718 - 64,959RGD
Celera1697,314 - 97,554UniSTS
FHH x ACI Map160.0UniSTS
FHH x ACI Map160.0RGD
Is Marker For: Strains:   SS.LEW-(D16Mit3-D16Rat112)/Ayd   SS.LEW-(D16Got3-D16Rat112)/Ayd   SS.LEW-(D16Rat112-D16Chm60)/Ayd  
QTLs:   Bp75  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CCTCTGTTCTTACATACCACAATCC
Reverse Primer AGTCCATATCCCTGTGCTCC
 
Template 
CTTGCATGCCTGCAGGTCGACTCTTAGAGGATCCCCCTGTCATGTACCTCTGTTCTTACATACC
ACAATCCTTTTACACANACACACATATACACACACATTTACACAGAGATACACACATACANCCC
TGATCTTATATANTGTNANACACATGTANAGNCATAGGTGNATTCAAAAATAGATTCACACTTC
TATACATNTGTGATGTAGNACAAGATTCCGTGTACNATGCCNTGGAAGTGAATCCACAAATGAT
ATTCACGCNCATCNAGGGAGCACAGGGATATGGACTGATATCCTCAGGGNGGGGCAATACATGC
TTGNNTNCTNNCAGCTGGGGNACAGAGCTNGANTTGGTANTCATGNGCATAGNTGTTTCGCGTG
TGAGATNGTNTACGCTCACACTNNCACACAANATANGAGANGGANGNGTACAGTGTGAANACTC
NGGTGCCTATTGAGTGNGCTCNTCACATGNNNNGNGTCGCGCNCACTGNCGCTNTTNACCGNGA
ANTGTNGTGNNNTGNNNNTGNNC

Region

Nucleotide Sequences
GenBank Nucleotide JH618582.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631524Bp75Blood pressure QTL 750.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)161110831Rat
2325838Bp347Blood pressure QTL 3470.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1613080679Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 369093 UniSTS
UniSTS 226770 UniSTS