D4Arb30 Marker Search Result - Rat Genome Database

General

Marker: D4Arb30

Symbol:

D4Arb30

Previously known as:

R0266-C03; oxsts7887;

RGD ID:

42168

Expected Size:

205 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
RGSC_v3.4	4	73,972,454 - 73,972,591	UniSTS	RGSC3.4
RGSC_v3.4	4	73,972,453 - 73,972,591	RGD	RGSC3.4
RGSC_v3.1	4	74,248,583 - 74,248,721	RGD
Celera	4	69,789,851 - 69,789,980	UniSTS
RH 3.4 Map	4	465.4	RGD
RH 3.4 Map	4	465.4	UniSTS
RH 2.0 Map	4	512.0	RGD
SHRSP x BN Map	4	37.38	RGD
FHH x ACI Map	4	45.77	RGD
Cytogenetic Map	4	q24	UniSTS

Is Marker For:

Strains: DA.F344-(D4Arb30-D4Arb4)/Arb
QTLs: Scwia1 Aia2 Aia3
Genes: Cntnap2 LOC100364190

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Localization of quantitative trait loci regulating adjuvant-induced arthritis in rats: evidence for genetic factors common to multiple autoimmune diseases.	Kawahito Y, etal., J Immunol 1998 Oct 15;161(8):4411-9
3.	High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence.	Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
4.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
5.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
6.	UniSTS Pipeline	RGD automated pipelines
7.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
8.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
9.	Electronic Submission of SSLP Data Sets	Wilder R. Oct.2000. National Institute of Arthritis and Musculoskeletal and Skin Diseases, ARB Rat Genetic Database
10.	Localization in rats of genetic loci regulating susceptibility to experimental erosive arthritis and related autoimmune diseases.	Wilder RL, etal., Transplant Proc 1999 May;31(3):1585-8

Strains and Sequence

Sequence


Forward Primer	ACTACCATAGAAAATGCTGG
Reverse Primer	GATCCACTGCTCAAACACAT

Region

Nucleotide Sequences


GenBank Nucleotide	CH473959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

RGD Curation Notes

Note Type	Note	Reference

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	100364190	UniSTS
	326415	UniSTS
	326477	UniSTS
	326478	UniSTS
	500105	UniSTS
UniSTS	121913	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D4Arb30