D1Rat327 Marker Search Result - Rat Genome Database

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Marker: D1Rat327

Symbol: D1Rat327
Previously known as: R0306-B02; oxsts10200; 
RGD ID: 41870
Expected Size: 230 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.217,818,261 - 7,818,492 (+)MAPPERmRatBN7.2
Rnor_6.017,587,829 - 7,588,059NCBIRnor6.0
Rnor_5.019,218,305 - 9,218,535UniSTSRnor5.0
RGSC_v3.418,210,067 - 8,210,298RGDRGSC3.4
RGSC_v3.418,210,068 - 8,210,298UniSTSRGSC3.4
RGSC_v3.118,210,054 - 8,210,563RGD
Celera16,305,899 - 6,306,129UniSTS
SHRSP x BN Map16.98RGD
SHRSP x BN Map16.98UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CCATTACGCTTTCTTGGTTTT
Reverse Primer AGCCCAGACATTTGAACTAACA
 
Template 
TGCAGGTCGATCTAGAGGATCCCCCTATTTTTCACTGCCGTCCTGACTTTTNTACTATTTTTAA
TGGTAGGCTTTCTAACACTACTTATAATCTTGGAGAATTAATGTTTCCAATATGGGAGTCTCTG
CATAGAAGATATTAGATTTTTTTTCTACTACCTTTCCTTTGGATTGTTACTTACAAGTCCACCC
ATTTATCAAACCGCAACAAGCCTGTGCTATTTTATTACATAGGGTGAAAGAAGTGGGGGAGGGA
ACCATGTAATTAGGATGTTTATAGAACGATCTACCATTACGCTTTCTTGGTTTTGTATTTATGT
CTAGTACCTCGAGNCAAAAGTGCATTTTTTTGTGTTTTCAGTGTTTTTAGGCGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTATGTGTGTGTGTGAGAGTGGGTAAGTGTGT
GTGAGTGTGAGTGTGTATAAGTGTGTATGTGTGTGTGAGTGTGTGTGTGTGTTAGTTCAAATGT
CTGGGCTCNACAAAGGAGGGGTACGAGCTCAATTCGTAATCATGGTCATAGCTGTTTCCTGTGT
GAAATTGTTATCCGCTCACAATTCCACACANATACGAGCCGGAAGCATAAAGTGTAAAGCCGGG
GTGCCAATGAGTGAGCTAACTCACATAATTGCGTTGCCTCACGCCCGTTTCCAGTCGGGAAANT
GTCGGCCAGCGCATTAAGAATCGGCCACGCGGGNGGAGGGGTNGCNATGGGNCNGGTGGTTTTC
NTCACGTGAACNNCACNCNNNGNCTCNGNG

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1303141Phactr2phosphatase and actin regulator 2175912547860431Rat

Nucleotide Sequences
GenBank Nucleotide JH612201.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1416280711481482Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat


Additional Information

Database Acc Id Source(s)
UniSTS 227131 UniSTS