D17Rat132 Marker Search Result - Rat Genome Database

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Marker: D17Rat132

Symbol: D17Rat132
Previously known as: R0220-C01; oxsts9837; 
RGD ID: 41226
Expected Size: 372 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21786,278,804 - 86,279,167 (-)MAPPERmRatBN7.2
Rnor_6.01790,522,442 - 90,522,804NCBIRnor6.0
Rnor_5.01792,183,405 - 92,183,767UniSTSRnor5.0
RGSC_v3.41766,735,752 - 66,736,115RGDRGSC3.4
RGSC_v3.41766,735,753 - 66,736,115UniSTSRGSC3.4
RGSC_v3.11766,746,492 - 66,747,055RGD
Celera1785,334,004 - 85,334,366UniSTS
SHRSP x BN Map1747.5399UniSTS
SHRSP x BN Map1747.5399RGD
Cytogenetic Map17q12.1UniSTS
Is Marker For: Strains:   BBDR/Rhw   BDIX/Han   BN/SsNHsd   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   MNS/Gib   OKA/Wsl   OM/Ztm   PVG/Pit   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Lyst  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TTTCATTTTGTGTGCATGAGTG
Reverse Primer GGCAGTTCAGGGAGAGTCTG
 
Template
GGTCGATCTAGAGGATCCCCCTAAATCCCCAACCCTAGTCCCAGGTTTGAAACATCTAAACACA
GTAGGCAGACATAAATAAGACTACTTGGGAGAAGACACTAGTGAGCAGTGGCAGTTCAGGGAGA
GTCTGACTTTCTCTCTTACATAGAATAAAACTAAACCATTACTTAGGAAATGGTTCTTGCTTTG
CATGTTTAAAATAGATAAATGAATCTTTAAAAATATAGCCTGGAGGCTGCAGAAATGGTTTAGT
GGTAAAGAACACTTGCTGCTCCTGCATTCAGTTCTTAGAATCCAAATGGAAACTTATAACTGCT
TTGTAACTCCAGTTCCAGGGTATCCAAGGCCTCCTTCTGGCCTCCATGGGTAGCAAGCATCCAT
GTGATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATATACCTA
TACATACAGAAAAGACACTCATGCACACAAAATGAAAATAAATATATCTTAACTACAGGATANA
TATATAGTATNCGTAATGTTTTCTCTTGATATATGNAGTCACTNGCCTACCCTCNAANCCACNC
CCTAGTCATANNGAAGTNTGGTCTGCNGTGGTGGATGAGA

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
621837Lystlysosomal trafficking regulator178624138486443501Rat



QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 85419 UniSTS
UniSTS 226841 UniSTS