D15Rat127 Marker Search Result - Rat Genome Database

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Marker: D15Rat127

Symbol: D15Rat127
Previously known as: R0262-B05; oxsts9633; 
RGD ID: 40490
Expected Size: 259 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21595,137,679 - 95,137,927 (+)MAPPERmRatBN7.2
Rnor_6.015103,281,673 - 103,281,920NCBIRnor6.0
Rnor_5.015106,720,199 - 106,720,446UniSTSRnor5.0
RGSC_v3.415102,869,577 - 102,869,825RGDRGSC3.4
RGSC_v3.415102,869,578 - 102,869,825UniSTSRGSC3.4
RGSC_v3.115102,885,164 - 102,885,641RGD
Celera1593,989,623 - 93,989,882UniSTS
SHRSP x BN Map1560.7698UniSTS
SHRSP x BN Map1560.7698RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GTAGCCATGGCTCAAAGAGC
Reverse Primer CCACATGCATGTTATGGCAT
 
Template 
ACTAGGTANTCTGGCAACGCAAACCCTCACACAGAAGTAGCCATGGCTCAAAGAGCAAGTTCCA
TTTGAAACTGCTTAGACATTCATCTCAAAATATTTTGAATGTGNGNNTGTGTGNGTGTGTGTGT
GTGGGNNGNNNGTGTGTGTATGTGGGTATGTGTATGTGTGTATGGGTGCATGTGTGTGTATATG
TGTGCATGGGTGTGTATAGGTGTGTATGTTTGTGTATGTGTCTGTGTGTATATTTGTGTATGTG
TGAGAATATTGGTATGCACATGCCATAACATGCATGTGGATGTCTGAGGACACCTCACAGTAGT
TGGTTCTCTCTTTCCACCATTTGTGTTTCTGGGACGGTGATGGCTGTTCCTGGTTGTCAACTTG
ACTATATCTGGAATGAACTACAACCCAGGAATGGAGGGCACACTGTGATCAATCTTGAGGCTGG
GAGATACAAGTTTCTGACTGGACTTGGCAGAAGANTGAGCAAGTG

Region

Nucleotide Sequences
GenBank Nucleotide CH473951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)158885347095840528Rat


Additional Information

Database Acc Id Source(s)
UniSTS 226687 UniSTS