D20Rat47 Marker Search Result - Rat Genome Database

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Marker: D20Rat47

Symbol: D20Rat47
Previously known as: R0234-A10; oxsts10362; 
RGD ID: 40208
Expected Size: 139 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2201,527,842 - 1,527,959 (+)MAPPERmRatBN7.2
Rnor_6.0202,018,654 - 2,018,770NCBIRnor6.0
Rnor_5.0204,059,279 - 4,059,395UniSTSRnor5.0
RGSC_v3.4201,616,333 - 1,616,449UniSTSRGSC3.4
RGSC_v3.4201,616,332 - 1,616,449RGDRGSC3.4
RGSC_v3.1201,616,333 - 1,616,449RGD
Celera202,236,388 - 2,236,504UniSTS
RH 3.4 Map2015.8RGD
RH 3.4 Map2015.8UniSTS
RH 2.0 Map200.0RGD
SHRSP x BN Map200.0RGD
Cytogenetic Map20p12UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   DA.E3-(D20Rat47-AA858870)/Rhd   GH/Omr   NEDH/K   SS/Jr   E3.DA-(D20Rat45-D20Rat47)/Rhd   LEA.F344-(D20Rat47-D20Mgh4)/Tj  
QTLs:   Pia40   Iddm37  
Genes:   Zfp57   RGD1559984  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer TGTCTCTTCAACCTCTCTGGC
Reverse Primer AGGTTTGAGCCCCAGGATAC
 
Template 
CGATCCCCCTTCTAAGGTTTGAGCCCCAGGATACCACACACACACACACACACACACACACACA
CACACACACATTACAAATACACAGAATGTGTGTTTTGACTTACTGGTACCCTTAACTGTGAAAT
ACAAGCCAGAGAGGTTGAAGAGACAGACTACTACAAAGTGGTATGTGACGACACATTACAGGTA
TGTGANTTTTACAGTGACNACTGAGTACTAGAATTAAACATACACTACTGACCGTGTGGACCAC
AGTACCTGGAATGGATGACTTAATGNTTACACTTACAAGTTTGTGAAAATGGAACCAATTTACC
NCANTTGGACACCTACCAAGAAGGNTACCATACACAGGGCAGGAAGGGTANGAGACNGAATTNG
TAATACATGGTACATAGNTGTTTACTGTGTGAAATTGTTATACCGNTACACATTCCACACAACA
TACGAGNGGAAGCATAAAGTGTAAAGCTGGGGTGNTAATGAGTGAGTAAATCCTTAATTGGTTG
CNTCATGANCNTTT

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1302981Zfp57zinc finger protein 572015213231534884Rat

Nucleotide Sequences
GenBank Nucleotide BX883052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH619561.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013624629Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100303008 UniSTS
  100306875 UniSTS
  361783 UniSTS
  499399 UniSTS
UniSTS 121560 UniSTS