D17Rat118 Marker Search Result - Rat Genome Database

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Marker: D17Rat118

Symbol: D17Rat118
Previously known as: R0106-A11; oxsts9823; 
RGD ID: 39752
Expected Size: 248 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01738,909,435 - 38,909,847NCBIRnor5.0
RGSC_v3.41741,650,444 - 41,650,855RGDRGSC3.4
RGSC_v3.11741,653,285 - 41,653,696RGD
RH 3.4 Map17391.8UniSTS
RH 3.4 Map17391.8RGD
RH 2.0 Map17285.9RGD
SHRSP x BN Map1728.1999RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Foco31   Insglur7   Pigfal18   Scfw6   Insul30   Scort9  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer GCCACGAAAGAATCAATTGTT
Reverse Primer GAAAAATGGGCAGAGCAGAG
 
Template 
ANGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCCATTGCCGGGCATCCATATCCTCAT
AGTGCATTGTCCAACTTACTCCTTTGGCTCTCCTCATGGGACCTATGGAGGTAAAATGTCAGAG
TGGTCTCAGACCCAAAACACAGGAACTGTCCAAGCAGAAAAATGGGCAGAGCAGAGCTCAAGAA
CCTAAAACACTGAGCAAAGCTGAGGAGACTCATAATTCGTGGATCTTGGAAATGACAGCAGGGC
AGTGTAGGAGCAGAAAAAAAAATCTTCCCTGTCCCTTACACACACACACACACACACACACACA
CACACACACACACACACACAATGCAGATTCTATTTGCAATGACTTGTGAATAGAAAATATTTTC
ATGGACCAACAATTGATTCTTTCGTGGCTTTGTATGCTATTAAGACATAATCTCAG

Region

Nucleotide Sequences


Additional Information

Database Acc Id Source(s)
UniSTS 121206 UniSTS