D2Rat190 Marker Search Result - Rat Genome Database

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Marker: D2Rat190

Symbol: D2Rat190
Previously known as: R0093-D10; oxsts10453; 
RGD ID: 39554
Expected Size: 136 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0222,988,221 - 22,988,322NCBIRnor6.0
Rnor_5.0242,184,052 - 42,184,206UniSTSRnor5.0
Celera220,697,451 - 20,697,590UniSTS
SHRSP x BN Map26.9998RGD
SHRSP x BN Map26.9998UniSTS
Cytogenetic Map2q12UniSTS
Is Marker For: Genes:   Homer1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TGAACCCCAGAAGTTCCTCA
Reverse Primer TGTAGGCTTTGAGTGTTGAGGA
 
Template 
CNGACTCAGAGGATCCCCACTGGGATTGGGGCAGAGGAACGCAGGCTTAAGGCCAGCTGGGACT
ACATAGCTGGGGTTGAAGGAAGCACCCTGATTAGTAACTGTAGGCTTTGAGTGTTGAGGAAGTT
ACAGGGGTGTGTGTGTGTGTNTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTATTATAACAGTAGGTTCCGAGTATTGAGGAACTTCTGGGGTTCATACGTAATGATTGATAAC
AGTAGGCTTTGAATATTCAGGAAGTCANCGTTTATGCAGAGTCAGAAATCCCCTCACACACCTG
GNCATNTGCCTGTCAAACTCCAGAGCTCTTACTCATGTGGGTACCGGGCTCGAATTCGTAATCA
TGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCG
GAAGCATAAAGTGTAAAGCCTGGGGTGCTAAT

Region

Nucleotide Sequences
GenBank Nucleotide CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 29546 UniSTS
UniSTS 227353 UniSTS