DXRat69 Marker Search Result - Rat Genome Database

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Marker: DXRat69

Symbol: DXRat69
Previously known as: R0083-D12; oxsts7619; 
RGD ID: 39120
Expected Size: 248 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X112,253,959 - 112,254,209 (+)MAPPERmRatBN7.2
Rnor_6.0X119,517,575 - 119,517,824NCBIRnor6.0
Rnor_5.0X119,663,119 - 119,663,368UniSTSRnor5.0
RGSC_v3.4X11,945,103 - 11,945,352UniSTSRGSC3.4
RGSC_v3.4X11,945,083 - 11,945,479RGDRGSC3.4
RGSC_v3.1X11,950,659 - 11,950,908RGD
CeleraX111,499,776 - 111,500,029UniSTS
RH 3.4 Map11475.69RGD
RH 3.4 Map11475.69UniSTS
SHRSP x BN MapX33.1599UniSTS
SHRSP x BN MapX33.1599RGD
FHH x ACI MapX34.63RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GCCTGCCATTTCCTCTCATA
Reverse Primer CAGAGATCCTCAGTCTGGGC
 
Template 
CAGAGGATCCCCCTGCTGTCCCAGAGGTATCCCAGAGATCCTCAGTCTGGGCTACTTTCACTGC
TCTTGGTTTCTCACAAGAACTTGTTGTTTTGTTATAGTAGATGCATGCATGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTCCCTGTCTGTCTGTCTTTCTATGTGTGTGTGAGAGAGA
GTTGGTGTGTGTATGTGTGTCTGTCTATCTGTATCTAAAACAATAGTAATTAAAGAAGAGGTCA
TGAATATGAGAGGAAATGGCAGGCAGCACAGAAAGACTTGGAGTGGGAAAAGGACAAGGTAGAG
AAATTTTAAGTATATTATTAAATATGAAATTCTTAAAAATGAAATAAAACTAATAAATAAGCAT
GCATATGAAAATAAAAATTAAAGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTC
CTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCNTANNGTGTAA
NCCTGGGGTGCCTANTGAGTGGCNNCNCACANNANTGCGTNCNCNCNTGNCGCTTNCATCGNAA
ACTNNGTNCANNGCATTATGANCGCCACGCGCGG

Region

Nucleotide Sequences
GenBank Nucleotide CH473991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat


Additional Information

Database Acc Id Source(s)
UniSTS 119219 UniSTS