D1Rat145 Marker Search Result - Rat Genome Database

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Marker: D1Rat145

Symbol: D1Rat145
Previously known as: R0083-D07; oxsts6566; 
RGD ID: 39116
Expected Size: 202 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01269,901,560 - 269,901,692NCBIRnor5.0
Rnor_5.01269,705,321 - 269,705,453NCBIRnor5.0
Rnor_5.01269,705,321 - 269,705,541NCBIRnor5.0
Rnor_5.01269,901,560 - 269,901,780NCBIRnor5.0
Rnor_5.01269,705,321 - 269,705,542NCBIRnor5.0
Rnor_5.01269,901,560 - 269,901,781NCBIRnor5.0
RGSC_v3.41247,866,323 - 247,866,542UniSTSRGSC3.4
RGSC_v3.41247,866,411 - 247,866,542UniSTSRGSC3.4
RGSC_v3.41247,866,322 - 247,866,542RGDRGSC3.4
RGSC_v3.11247,980,743 - 247,981,217RGD
Celera1237,646,394 - 237,646,509UniSTS
SHRSP x BN Map1135.6499UniSTS
SHRSP x BN Map1135.6499RGD
FHH x ACI Map1128.0699RGD
Cytogenetic Map1q54UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   F344/Pit   LE/Mol   MHS/Gib   WTC/Kyo   MNR/N   ODU/N   WF/Pit   SR/Jr   MNS/Gib   NP9   OKA/Wsl   SD/Rij   SHR/OlaHsd   GK/KyoSwe   M520/N   BN-Lx/Cub   LN/Mav   GH/Omr   SS/Jr   DON/Melb   FHH/Eur   IS/Kyo   LEW/Pit   LH/Mav   MNRA/N   WN/N   WKY/OlaHsd   LOU/CHan   MR/Pit   WIST/Nhg   PVG/Pit   SHRSP/Riv   WAG/RijKyo   ACI/N   NEDH/K  
QTLs:   Stresp9   Gluco45   Insul12   Bw85   Gluco51  
Genes:   Hpse2  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GTATCCCATTTCCCCATGTG
Reverse Primer TGTGTGAGCAGTGTGTGTGTG
 
Template 
CGAGGATCCCCCCTCACCTCGCAAGGCCTGTCCTTGTGCAGTCCAGTTCCGTCCCCTGTATCNC
TGTGTTTCTGTCCCTCATGTCATATCATGTATGTCTGCCGTNTCTATGTGTGAGCAGTGTGTGT
GTGTGAGAGAGAGAGAGAGAGAGTATTCGNCGGTGTGTGTGTGTGAGAGTGTGTGTGAGTGTGT
GTGAGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTTGCTCNAACAATGCGGT
TTNCATCCCTATCCTACTGACTAGCATAGAAAGCATCACATGGGGAAATGGGATACTCCANAGA
AATCTTGAACAGAGTTNNACAAGGGATTAAGTNACTGGCTCCAACTCACNCCGGTAAAANANAC
GNCTTTNAGCNCCTATNTNCGCANNCACNTGCTTNCGACCTTTACGGTAGACTTCAGNCACGNN
CGNGNNNGNGCTTGGTGCTTTCAGCAAAAGNACCTGTTGTTNTNCNGGGNCAGGNNCGGNGANT
NT

Region

Nucleotide Sequences
GenBank Nucleotide CH473986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100303134 UniSTS
  100303430 UniSTS
  100303437 UniSTS
  100303624 UniSTS
  100303625 UniSTS
  368128 UniSTS
UniSTS 227042 UniSTS