D14Rat41 Marker Search Result - Rat Genome Database

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Marker: D14Rat41

Symbol: D14Rat41
Previously known as: R0073-D01; oxsts9565; 
RGD ID: 38486
Expected Size: 140 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21426,585,205 - 26,585,343 (+)MAPPERmRatBN7.2
Rnor_6.01428,610,223 - 28,610,358NCBIRnor6.0
Rnor_5.01428,430,315 - 28,430,450UniSTSRnor5.0
RGSC_v3.41428,613,332 - 28,613,468RGDRGSC3.4
RGSC_v3.41428,613,333 - 28,613,468UniSTSRGSC3.4
RGSC_v3.11428,613,272 - 28,613,579RGD
Celera1425,946,331 - 25,946,466UniSTS
SHRSP x BN Map1415.94UniSTS
SHRSP x BN Map1415.94RGD
FHH x ACI Map1426.22RGD
Cytogenetic Map14p21UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   WIST/Nhg   MNS/Gib   WAG/RijKyo   LN/Mav  
Genes:   Adgrl3  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TCCCAGTTTATCACTCCATAATCA
Reverse Primer TTTCACAATATAGTCATTGCTGGAA
 
Template 
TNNCNCGTNNCAGTGCCCAAGCTTGCATGCCTGCAGGTTCGACTCCTAGTAGGATCCCCTCTTG
TGGCACCCGGGCTAACTTTCAAACTTGCAATGTAGTCAAGAATGAGTTGCCTATATTTCACAAT
ATAGTCATTGCTGGAACTACAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTATAATATTTAGTTTTTCCTTCAGTGAGATTATAGATGATTATGGAGTGATAAACTG
GGATTTAAGAAAATTTGAAAATCTCAAAATTCATATATCCATCTGATTACTTTAACAGTATTAG
GAAGAANNNAANGTCNNNNNCCTGGNNCCAGGGCTGTAGGCACTGCCAGGGGTACCGAGCTCGA
ATTCGTAATCTGGTCATAGCTGTTTCCTGT
Strain Variation
Strain, Expected Size(s)
AVN/Orl143
BBDP/Rhw141
LEW/Pit143
LH/Mav141
LN/Mav141
LOU/CHan141
MHS/Gib141
MNR/N143
MNRA/N141
MNS/Gib141
WAG/RijKyo143
WIST/Nhg143
WKY/OlaHsd141
WTC/Kyo141


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
620836Adgrl3adhesion G protein-coupled receptor L3142633632027104060Rat

Nucleotide Sequences
GenBank Nucleotide CH473981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141487516830883947Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 170641 UniSTS
UniSTS 226648 UniSTS