D16Rat90 Marker Search Result - Rat Genome Database

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Marker: D16Rat90

Symbol: D16Rat90
Previously known as: R0073-A08; oxsts9796; 
RGD ID: 38444
Expected Size: 208 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21680,345,485 - 80,345,693 (+)MAPPERmRatBN7.2
Rnor_6.01686,162,765 - 86,162,972NCBIRnor6.0
Rnor_5.01685,596,850 - 85,597,057UniSTSRnor5.0
RGSC_v3.41685,734,272 - 85,734,479UniSTSRGSC3.4
RGSC_v3.41685,734,271 - 85,734,479RGDRGSC3.4
RGSC_v3.11685,720,312 - 85,720,519RGD
Celera1678,128,489 - 78,128,696UniSTS
RH 3.4 Map16775.0RGD
RH 3.4 Map16775.0UniSTS
RH 2.0 Map16882.4RGD
FHH x ACI Map1649.5899RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   OKA/Wsl   OM/Ztm   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   ACI/N   LN/Mav   NEDH/K   SS/Jr   COP/OlaHsd   COP.DA-(D16Rat12-D16Rat90)/Mco   COP.DA-(D16Rat12-D16Rat90)/McoRrrc   GH/Omr   BUF/Pit   LE/Mol   P5C   M520/N   BN-Lx/Cub  
QTLs:   Arunc4  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer AAGGTGGAAGGAGAGAACCA
Reverse Primer GGAGTCAAGGCAGGAAAACA
 
Template 
ATGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTCAGGGAAGGAGTCAAGGCAGGAAAACAC
TATGAACTCCTGTAGTTTTTATGACAGAAAGAAAAACATTTCACCTTTTAATTCCCTCTCTCTC
TCTCTCNCTTNCNCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTATTCATATGTGAAGATCAGAAGACAACCTCAGGTGATGGTTCTCTCCTTCCACCTTCTTTT
CTATCAAAGTCTCCAGGAGTTCAGGACAGTATATGCCAGGCTAGCTCAGGGAATCCCTAGTGGT
CTTGCTGAACATTCCCTAGACTTCANGTCCATTCCAAAAGATGTTCCAGGAGACCAACATTGCC
TCTTGCTCCCTCTTTTTCTTAAGATCAGACAATATAGTGGCTTGCATTTCTCCTGTTGCCCTTT
ATGGCTAGTTCNCTAGTGAGNCCNTGTATATTCCATCTATTATNNGTNTNGCTNTTAGAGNNCN
ATTNNGAGGNNGNNTCATGTNNATANGANANCAAGANAGGGGNNGGNCGAATCGTATCATGGNA
NGNGTTCC

Region

Nucleotide Sequences
GenBank Nucleotide CH473970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100303240 UniSTS
UniSTS 121180 UniSTS