Marker: D15Rat63 |
| Symbol: |
D15Rat63 |
| Previously known as: |
R0068-C06; oxsts6290;
|
| RGD ID: |
38178 |
| Expected Size: |
170 (bp) |
| Position |
| Rat Assembly | Chr | Position (strand) | Source | JBrowse |
|---|
mRatBN7.2 | 15 | 99,794,071 - 99,794,247 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 15 | 109,133,729 - 109,133,904 | NCBI | Rnor6.0 | Rnor_5.0 | 15 | 112,515,664 - 112,515,839 | UniSTS | Rnor5.0 | RGSC_v3.4 | 15 | 107,849,474 - 107,849,649 | UniSTS | RGSC3.4 | RGSC_v3.4 | 15 | 107,849,473 - 107,849,649 | RGD | RGSC3.4 | RGSC_v3.1 | 15 | 107,865,254 - 107,865,429 | RGD | | Celera | 15 | 98,564,878 - 98,565,053 | UniSTS | | RH 3.4 Map | 15 | 710.8 | RGD | | RH 3.4 Map | 15 | 710.8 | UniSTS | | RH 2.0 Map | 15 | 611.6 | RGD | | FHH x ACI Map | 15 | 73.9699 | RGD | | Cytogenetic Map | 15 | q25 | UniSTS | |
|
| Is Marker For: |
Strains:
BBDP/Rhw
BBDR/Rhw
BC/CpbU
BDIX/Han
BDVII/Cub
BN/SsNHsd
BP/Cub
BUF/Pit
DA/PitN
DON/Melb
F344/Pit
FHH/Eur
IS/Kyo
LE/Mol
LEW/Pit
LH/Mav
MHS/Gib
WN/N
WKY/OlaHsd
WTC/Kyo
LOU/CHan
MNR/N
MR/Pit
ODU/N
WF/Pit
WIST/Nhg
SR/Jr
MNS/Gib
NP9
OKA/Wsl
OM/Ztm
P5C
PVG/Pit
SD/Rij
SHR/OlaHsd
SHRSP/Riv
WAG/RijKyo
GK/KyoSwe
M520/N
ACI/N
BN-Lx/Cub
LN/Mav
GH/Omr
NEDH/K
SS/Jr
COP/OlaHsd
QTLs:
Colcr6
Genes:
Pcca
|
Annotation
References - curated
| # |
Reference Title |
Reference Citation |
| 1. |
Data downloaded from Wellcome Trust, University of Oxford |
Data downloaded from Wellcome Trust, University of Oxford
|
| 2. |
High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. |
Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
|
| 3. |
Rat Genetic Map Data |
Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
|
| 4. |
Electronic Transfer of SSLP Data |
Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
|
| 5. |
UniSTS Pipeline |
RGD automated pipelines
|
| 6. |
RH Map Project |
RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
|
| 7. |
A high density integrated genetic linkage and radiation hybrid map of the laboratory rat |
Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
|
Strains and Sequence
Sequence
| |
| Forward Primer |
TCTGAACTCCATAGGTGCCA |
| Reverse Primer |
TGGCAACCATTTGCTTTGTA |
| |
| Template |
ATGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTGTGTTTGCTCCCCATCTCC
AGCCAGCATTCCCTCCTGGCTGGCCTCTCCACACAAATGCACACTGGCAACCATTTGCTTTGTA
TACAGTGAACTTCTCCGATTTAAAAAAATGCATTTATTTTTATGTGTATGATGGTTTTGCTTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGCACCATGCATGTG
CCTGGCACCTATGGAGTTCAGAAGAGGTTTCCTGGAACTGGAGTTTTAAGTGTTTGTGAGGTAC
CGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAAT
TCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGNCTAATGAGTGAGNNCT
CACATTATTGNGTGNCTCACTNNCGNTTCAGTCGGGAAACTGTCGTGCCAGTGCATTATGNTTG
GCACCGCGGGAGNGNGNTNNATTGNCGCANGTGNTTCTNTNNATGNAGGACANTNNGCNCACGC
TGGNTGAAANNACACGCNGNGTTCCACAGGAAATCTTTGNGGGNCGAACGNACCTTATAAAAAC
GNNGG
|
Strain Variation
Strain, Expected Size(s)
Region
Genes in Region
| 3264 | Pcca | propionyl-CoA carboxylase subunit alpha | 15 | 99627955 | 99969555 | Rat | |
QTLs in Region (mRatBN7.2)
| 631655 | Bp126 | Blood pressure QTL 126 | 4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 15 | 58156477 | 101769107 | Rat | | 731177 | Uae26 | Urinary albumin excretion QTL 26 | 2.4 | 0.025 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 15 | 67588667 | 101769107 | Rat | | 2300326 | Plaw1 | Placental weight QTL 1 | 15 | 0.005 | placenta mass (VT:0004257) | placenta wet weight (CMO:0002088) | 15 | 68327165 | 100062518 | Rat | | 1641889 | Colcr6 | Colorectal carcinoma resistance QTL 6 | 2.9 | 0.0126 | intestine integrity trait (VT:0010554) | benign colorectal tumor surface area measurement (CMO:0001799) | 15 | 73690518 | 99794247 | Rat | | 2317055 | Aia10 | Adjuvant induced arthritis QTL 10 | 3.41 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 15 | 75788062 | 101769107 | Rat | | 1549844 | Bss7 | Bone structure and strength QTL 7 | 6.4 | | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 15 | 75788062 | 101769107 | Rat | | 70155 | Gcs1 | Gastric cancer susceptibility QTL1 | 3.8 | | stomach morphology trait (VT:0000470) | stomach tumor susceptibility score (CMO:0002043) | 15 | 76306099 | 101769107 | Rat | |
