D14Rat46 Marker Search Result - Rat Genome Database

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Marker: D14Rat46

Symbol: D14Rat46
Previously known as: R0059-C09; oxsts6225; 
RGD ID: 37638
Expected Size: 204 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21445,792,708 - 45,792,904 (+)MAPPERmRatBN7.2
mRatBN7.21446,731,111 - 46,731,319 (+)MAPPERmRatBN7.2
Rnor_6.01448,738,353 - 48,738,560NCBIRnor6.0
Rnor_6.01447,716,056 - 47,716,251NCBIRnor6.0
Rnor_5.01448,904,215 - 48,904,422UniSTSRnor5.0
Rnor_5.01447,891,714 - 47,891,909UniSTSRnor5.0
RGSC_v3.41450,607,501 - 50,607,708UniSTSRGSC3.4
RGSC_v3.41448,529,615 - 48,529,810UniSTSRGSC3.4
RGSC_v3.41450,607,500 - 50,607,708RGDRGSC3.4
RGSC_v3.11450,609,891 - 50,610,099RGD
Celera1444,897,721 - 44,897,916UniSTS
Celera1446,035,608 - 46,035,813UniSTS
SHRSP x BN Map1428.34UniSTS
SHRSP x BN Map1428.34RGD
Cytogenetic Map14q11UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BDIX/Han   BDVII/Cub   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Arap2  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CAGGTCTTATCACAGAGACAGAGAA
Reverse Primer TGTCCTGCAAAAGTACTTATTTACA
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1595096Wdr82-ps2WD repeat domain 82, pseudogene 2144580766245808729Rat
1595055Lin9-ps1lin-9 DREAM MuvB core complex component, pseudogene 1144587754745880236Rat
1596919Wdr82-ps1WD repeat domain 82, pseudogene 1144620044246349977Rat
41003067LOC120096870U6 spliceosomal RNA144648489546485001Rat
1587839Tra2b-ps1transformer 2 beta, pseudogene 1144660261946605408Rat
2323176Dthd1death domain containing 1144667043846673183Rat
1306452Arap2ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2144671765746917326Rat

Nucleotide Sequences
GenBank Nucleotide JH618107.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 305367 UniSTS
UniSTS 120991 UniSTS