DXRat120 Marker Search Result - Rat Genome Database

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Marker: DXRat120

Symbol: DXRat120
Previously known as: R0057-A03; oxsts11756; 
RGD ID: 37482
Expected Size: 143 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X2,982,186 - 2,982,331 (+)MAPPERmRatBN7.2
Rnor_6.0X3,268,720 - 3,268,864NCBIRnor6.0
Rnor_5.0X4,059,646 - 4,059,790UniSTSRnor5.0
RGSC_v3.4X14,476,176 - 14,476,321RGDRGSC3.4
RGSC_v3.4X14,476,177 - 14,476,321UniSTSRGSC3.4
RGSC_v3.1X14,481,631 - 14,481,970RGD
CeleraX3,538,411 - 3,538,541UniSTS
SHRSP x BN MapX0.0UniSTS
SHRSP x BN MapX0.0RGD


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GTACACACACATGGGCTTGC
Reverse Primer ATGGAGATGAATGGTGTGGC
 
Template 
CAGAGGATCCCCCTAACTGTAACAATGAGCCTCAAGTTCAGTGGGAGACCATGTCTAGAGACAA
AAAGACAAAGAATTATAGAGTTTCCACATGGGTTTGCATAAGTACACACACATGGGCTTGCAGG
CACATGTGCGAGCGCGCGCGCACACACACACACACACACACACACACACACACACACACACACA
CATGATTCTAGTTCATTTTGTAGCCAAATTAATCTTGCCACACCATTCATCTCCATTCTGAAAA
TTATATAAACATGAAAGCATTAAATAGTCATGTACATTCTATCTTCTGTTACATTTATCTGTTT
TATACTGCATTTTTATGACTAGTTCACAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAG
CTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAA
AGTGTAAAGCCTGGGGTGCCTA

Region

Nucleotide Sequences
GenBank Nucleotide JH619731.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
70166Bp65Blood pressure QTL 655.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144797211374346Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X144797220991088Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
631204Gluco15Glucose level QTL 150.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X162371522646544Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat


Additional Information

Database Acc Id Source(s)
UniSTS 122591 UniSTS