Marker: DXRat38 |
Symbol: |
DXRat38 |
Previously known as: |
R0055-D12; oxsts11789;
|
RGD ID: |
37458 |
Expected Size: |
198 (bp) |
Position |
Rat Assembly | Chr | Position (strand) | Source | JBrowse |
---|
mRatBN7.2 | X | 12,399,776 - 12,399,972 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | X | 13,471,667 - 13,471,862 | NCBI | Rnor6.0 | Rnor_5.0 | X | 14,261,244 - 14,261,439 | UniSTS | Rnor5.0 | RGSC_v3.4 | X | 24,554,528 - 24,554,723 | UniSTS | RGSC3.4 | RGSC_v3.4 | X | 24,554,452 - 24,554,815 | RGD | RGSC3.4 | RGSC_v3.1 | X | 24,607,846 - 24,608,041 | RGD | | Celera | X | 13,012,821 - 13,013,016 | UniSTS | | RH 3.4 Map | X | 90.7 | RGD | | RH 3.4 Map | X | 90.7 | UniSTS | | RH 2.0 Map | 21 | 68.3 | RGD | | SHRSP x BN Map | X | 0.0 | RGD | |
|
Is Marker For: |
Strains:
AVN/Orl
BBDP/Rhw
BBDR/Rhw
BC/CpbU
BDIX/Han
BDVII/Cub
BN/SsNHsd
BUF/Pit
DA/PitN
DON/Melb
F344/Pit
FHH/Eur
IS/Kyo
LE/Mol
LEW/Pit
LH/Mav
MHS/Gib
MNRA/N
WN/N
WKY/OlaHsd
WTC/Kyo
LOU/CHan
MNR/N
MR/Pit
ODU/N
WF/Pit
WIST/Nhg
SR/Jr
MNS/Gib
NP9
OKA/Wsl
OM/Ztm
P5C
PVG/Pit
SD/Rij
SHR/OlaHsd
SHRSP/Riv
WAG/RijKyo
GK/KyoSwe
M520/N
ACI/N
BN-Lx/Cub
LN/Mav
GH/Omr
NEDH/K
SS/Jr
|
Annotation
References - curated
# |
Reference Title |
Reference Citation |
1. |
Data downloaded from Wellcome Trust, University of Oxford |
Data downloaded from Wellcome Trust, University of Oxford
|
2. |
High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. |
Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
|
3. |
Rat Genetic Map Data |
Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
|
4. |
Electronic Transfer of SSLP Data |
Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
|
5. |
UniSTS Pipeline |
RGD automated pipelines
|
6. |
RH Map Project |
RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
|
7. |
A high density integrated genetic linkage and radiation hybrid map of the laboratory rat |
Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
|
Strains and Sequence
Sequence
|
Forward Primer |
TGGGAGTTACTGAATTATTGCTG |
Reverse Primer |
TGGGTTCGTATACATGGCAA |
|
Template |
CTGCAGGTCGACTCTAGAGGATCCCCCTTAGCCTAATGGATGAACTTCACATTCAGTAAGAGAT TGTCTCAAAATAAGGTGGAAAGCAATGAAGAAGTGGCCTCCACAGGCTCTTACATGGGTTCGTA TACATGGCAAATGTACACACACACACACACACACACACACACACACACACACACACACACACAC GTCACATTAATCTTAAGAGATTTTAGTTATTCTTGTAAGCACATACTCATTTAATTAGTTGAGC ACAGTATACTGAAGAATAGAATTGTGAACTCTATTGACAGCAATAATTCAGTAACTCCCAGAAA TAATGCTTCCCTCTGTAACCAGATACTGAATGAGTTTTCCTGTTTCTCTGGATTAGAGTTAATG CCTAAAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTT ATCCGCTCACAATTCCACACA
|
Strain Variation
Strain, Expected Size(s)
Region
QTLs in Region (mRatBN7.2)
731181 | Uae27 | Urinary albumin excretion QTL 27 | 2.7 | 0.0059 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | X | 1 | 43491017 | Rat | 634325 | Bw13 | Body weight QTL 13 | 0 | | body mass (VT:0001259) | body weight (CMO:0000012) | X | 1447972 | 20991088 | Rat | 70165 | Bp64 | Blood pressure QTL 64 | 5.2 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | X | 1448129 | 31706553 | Rat | 631204 | Gluco15 | Glucose level QTL 15 | | 0.001 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | X | 1623715 | 22646544 | Rat | 1298071 | Edpm12 | Estrogen-dependent pituitary mass QTL 12 | 3.2 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | X | 2927898 | 47927898 | Rat | 10755455 | Coatc13 | Coat color QTL 13 | | 0 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 7 | 4406000 | 49406000 | Rat | 631666 | Iddm5 | Insulin dependent diabetes mellitus QTL 5 | | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | X | 4494549 | 49494549 | Rat | |
Additional Information
External Database Links
Database |
Acc Id |
Source(s) |
UniSTS |
120599 |
UniSTS |
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