D2Rat119 Marker Search Result - Rat Genome Database

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Marker: D2Rat119

Symbol: D2Rat119
Previously known as: R0055-C11; oxsts6806; 
RGD ID: 37452
Expected Size: 193 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.02203,274,410 - 203,274,569NCBIRnor5.0
Rnor_5.02203,274,411 - 203,274,569NCBIRnor5.0
RGSC_v3.42176,639,396 - 176,639,583UniSTSRGSC3.4
RGSC_v3.42176,639,397 - 176,639,583RGDRGSC3.4
RGSC_v3.12176,589,503 - 176,589,689RGD
Celera2164,199,696 - 164,199,869UniSTS
RH 3.4 Map21103.5RGD
RH 3.4 Map21103.5UniSTS
SHRSP x BN Map270.0898UniSTS
SHRSP x BN Map270.0898RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Fbxw7  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CGGAGTGCTGCTAAAAATCC
Reverse Primer TGAAGCATCAGCAGCAAAAC
 
Template
TNGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTTTCTTTACCAGATTCCTTTGCCTC
CTTCTGAAGCATCAGCAGCAAAACTTTTGTATTCTGCCATATTCAAGACAAGCCAAGTTTTCTC
CTTTCATGTTCTTCAAAATNCTACCAGTTGTCTGCCCATTCTCCAAGTTCTACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACCCCAAAGGATTTTTAGCAGCA
CTCCGTGAATAGGTACCAAAGTCTGCATCAGGGGTACCGAGCTCGAATTCGTAATCATGGTCAT
AGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCAT
AAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTG
CCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGC

Region

Nucleotide Sequences
GenBank Nucleotide CH473976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100360914 UniSTS
UniSTS 118660 UniSTS