D4Rat123 Marker Search Result - Rat Genome Database

General

Marker: D4Rat123

Symbol:

D4Rat123

Previously known as:

R0054-C11; oxsts10859;

RGD ID:

37378

Expected Size:

244 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source
RGSC_v3.1	2	156,206,225 - 156,206,546	RGD
SHRSP x BN Map	4	98.8099	UniSTS
SHRSP x BN Map	4	98.8099	RGD

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd WAG/RijKyo M520/N BN-Lx/Cub LN/Mav GH/Omr NEDH/K SS/Jr COP/OlaHsd
QTLs: Bss12 Bss13 Bss15 Bss14

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence


Forward Primer	TCAAGAAGGCCGTTTTTCAT
Reverse Primer	AGGAAGCCTGTCAGAAGCAC

Template	GAGATTTTAAACATACGATATTTTCCAATTACAGTGGGTTTATCGGTTGTGACCCCATTGTCAG CCGAGGAGCTTCTGTATTCCACAGCCTCCCTGGTGGCTCAATTATGCAGTCCAGTTTGAGAATG ATTGTAGAGGAAGCCTGTCAGAAGCACAGATAGATACCCAAGTCCAATCTAGACCTACTGGATC AGGATTTTCATAGGAGATCCGGGCAGCTAAATTGGCTTGCTAAATTGCTTGCTTGCATGAGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTATGAGAGAAGTGTTTTATGT GCATATGTACCCCTGGGAAGTATGAGATGGAAGTTACCTATGAAAAACGGCCTTCTTGAGAGCC ATGTGCAGTCTGGCTTAAAACAATAAGCAATCTTGCCCCAAGGACAACATTCTCTACAAATATG GTCTGGATGCTTATCAAACAAGTTTTAGGCTTCTCTCTG

Strain Variation

Strain, Expected Size(s)

AVN/Orl	226
BBDP/Rhw	226
BBDR/Rhw	226
BDIX/Han	226
BDVII/Cub	226
BN-Lx/Cub	222
BN/SsNHsd	222
BP/Cub	226
BUF/Pit	226
COP/OlaHsd	226
DA/PitN	226

DON/Melb	226
F344/Pit	226
FHH/Eur	226
GH/Omr	226
IS/Kyo	226
LE/Mol	222
LEW/Pit	226
LH/Mav	222
LN/Mav	222
LOU/CHan	226
M520/N	226

MHS/Gib	226
MNR/N	226
MNRA/N	226
MNS/Gib	226
MR/Pit	226
NEDH/K	226
NP9	216
ODU/N	226
OKA/Wsl	226
OM/Ztm	226
P5C	226

PVG/Pit	226
SD/Rij	226
SHR/OlaHsd	226
SR/Jr	222
SS/Jr	222
WAG/RijKyo	226
WF/Pit	226
WIST/Nhg	226
WN/N	226
WTC/Kyo	226

Region

Nucleotide Sequences

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	100302815	UniSTS
	100303190	UniSTS
	100303192	UniSTS
	100303380	UniSTS
UniSTS	227711	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D4Rat123