Marker: D19Rat6 |
Symbol: |
D19Rat6 |
Previously known as: |
R0046-B02; oxsts6522; R046-B02;
|
RGD ID: |
37006 |
Expected Size: |
154 (bp) |
Position |
Rat Assembly | Chr | Position (strand) | Source | JBrowse |
---|
mRatBN7.2 | 19 | 47,718,397 - 47,718,547 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 19 | 52,312,000 - 52,312,149 | NCBI | Rnor6.0 | Rnor_5.0 | 19 | 63,060,074 - 63,060,223 | UniSTS | Rnor5.0 | RGSC_v3.4 | 19 | 49,922,409 - 49,922,558 | UniSTS | RGSC3.4 | RGSC_v3.4 | 19 | 49,922,408 - 49,922,558 | RGD | RGSC3.4 | RGSC_v3.1 | 19 | 49,927,290 - 49,927,439 | RGD | | Celera | 19 | 46,976,371 - 46,976,520 | UniSTS | | RH 3.4 Map | 19 | 652.9 | UniSTS | | RH 3.4 Map | 19 | 652.9 | RGD | | RH 2.0 Map | 19 | 644.8 | RGD | | SHRSP x BN Map | 19 | 40.2999 | RGD | |
|
Is Marker For: |
Strains:
AVN/Orl
BBDP/Rhw
BBDR/Rhw
BC/CpbU
BDIX/Han
BDVII/Cub
BP/Cub
BUF/Pit
DA/PitN
DON/Melb
F344/Pit
FHH/Eur
IS/Kyo
LE/Mol
LEW/Pit
LH/Mav
MHS/Gib
MNRA/N
WN/N
WKY/OlaHsd
WTC/Kyo
LOU/CHan
MNR/N
MR/Pit
ODU/N
WF/Pit
WIST/Nhg
SR/Jr
MNS/Gib
NP9
OKA/Wsl
OM/Ztm
P5C
PVG/Pit
SD/Rij
SHR/OlaHsd
SHRSP/Riv
WAG/RijKyo
GK/KyoSwe
M520/N
ACI/N
BN-Lx/Cub
LN/Mav
GH/Omr
NEDH/K
SS/Jr
COP/OlaHsd
|
Annotation
References - curated
# |
Reference Title |
Reference Citation |
1. |
Data downloaded from Wellcome Trust, University of Oxford |
Data downloaded from Wellcome Trust, University of Oxford
|
2. |
High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. |
Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
|
3. |
Rat Genetic Map Data |
Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
|
4. |
Electronic Transfer of SSLP Data |
Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
|
5. |
UniSTS Pipeline |
RGD automated pipelines
|
6. |
RH Map Project |
RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
|
7. |
A high density integrated genetic linkage and radiation hybrid map of the laboratory rat |
Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
|
Strains and Sequence
Sequence
|
Forward Primer |
TGTGAGCATACAAGGAAACTGG |
Reverse Primer |
ACTGGTAGAAAGCAGGGGGT |
|
Template |
AGNGNNGNGGTGGTGGGNGGGGGTNNGGGGGNGGGGGNNGGNGGTNGNGGAGGGGGNTTGNGGG TGNNGGGGNGNCGCGCCACCCCCGGGGNNTNNTTNGGCAGTTNAACTTCATGCTGCAGGTCGCT CTAGAGGATCCCCCTGGGTTACAAACGCATACTCCCACACTGCCTTTTTGTGTGTGTGTGGGGA TCAGGCTCAGGTCTCTGTGCCTGCGAGGGAAATATTTCACCAACAAAGCCCATCACCTCAACTC CCACAATGACCCCAGAGAACTCTCAAAACTGGTAGAAAGCAGGGGGTATGTCCTTGGCTTCTGA CTGTGTGTGCATTGAAAACTGCTCCTGGATCCAAAGGAACCATGAGGGTCACACACACACACAC ACACACACACACACACACACACACACACACACCAGTTTCCTTGTATGCTCACACAGGTACCGAG CTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTC
|
Strain Variation
Strain, Expected Size(s)
Region
QTLs in Region (mRatBN7.2)
2317848 | Alcrsp21 | Alcohol response QTL 21 | 1.899999976158142 | 0.05 | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 19 | 3204777 | 48204777 | Rat | 5135224 | Leukc1 | Leukocyte quantity QTL 1 | | | eosinophil quantity (VT:0002602) | blood eosinophil count (CMO:0000033) | 19 | 44340214 | 55283277 | Rat | 7411549 | Bw130 | Body weight QTL 130 | 5 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 19 | 15455860 | 57337602 | Rat | 1331737 | Uae29 | Urinary albumin excretion QTL 29 | 5.5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 19 | 4096155 | 55283277 | Rat | 1578764 | Stresp19 | Stress response QTL 19 | 3.6 | 0.001 | blood renin amount (VT:0003349) | plasma renin activity level (CMO:0000116) | 19 | 15630201 | 57337602 | Rat | 724566 | Uae12 | Urinary albumin excretion QTL 12 | 5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 19 | 2187927 | 56457239 | Rat | 2298478 | Eau8 | Experimental allergic uveoretinitis QTL 8 | | 0.0163 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 19 | 17154433 | 57337602 | Rat | 61350 | Bp32 | Blood pressure QTL 32 | | 0.012 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 19 | 20483575 | 57337602 | Rat | 724546 | Kidm3 | Kidney mass QTL 3 | 3.1 | | kidney mass (VT:0002707) | calculated kidney weight (CMO:0000160) | 19 | 29322490 | 57337602 | Rat | 1358200 | Insglur2 | Insulin/glucose ratio QTL 2 | 4.1 | | blood glucose amount (VT:0000188) | serum insulin level (CMO:0000358) | 19 | 33838214 | 55283146 | Rat | 1358200 | Insglur2 | Insulin/glucose ratio QTL 2 | 4.1 | | blood glucose amount (VT:0000188) | serum glucose level (CMO:0000543) | 19 | 33838214 | 55283146 | Rat | |
Additional Information
External Database Links
Database |
Acc Id |
Source(s) |
UniSTS |
119565 |
UniSTS |
|
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