D19Rat6 Marker Search Result - Rat Genome Database

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Marker: D19Rat6

Symbol: D19Rat6
Previously known as: R0046-B02; oxsts6522; R046-B02; 
RGD ID: 37006
Expected Size: 154 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21947,718,397 - 47,718,547 (+)MAPPERmRatBN7.2
Rnor_6.01952,312,000 - 52,312,149NCBIRnor6.0
Rnor_5.01963,060,074 - 63,060,223UniSTSRnor5.0
RGSC_v3.41949,922,409 - 49,922,558UniSTSRGSC3.4
RGSC_v3.41949,922,408 - 49,922,558RGDRGSC3.4
RGSC_v3.11949,927,290 - 49,927,439RGD
Celera1946,976,371 - 46,976,520UniSTS
RH 3.4 Map19652.9UniSTS
RH 3.4 Map19652.9RGD
RH 2.0 Map19644.8RGD
SHRSP x BN Map1940.2999RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer TGTGAGCATACAAGGAAACTGG
Reverse Primer ACTGGTAGAAAGCAGGGGGT
 
Template
AGNGNNGNGGTGGTGGGNGGGGGTNNGGGGGNGGGGGNNGGNGGTNGNGGAGGGGGNTTGNGGG
TGNNGGGGNGNCGCGCCACCCCCGGGGNNTNNTTNGGCAGTTNAACTTCATGCTGCAGGTCGCT
CTAGAGGATCCCCCTGGGTTACAAACGCATACTCCCACACTGCCTTTTTGTGTGTGTGTGGGGA
TCAGGCTCAGGTCTCTGTGCCTGCGAGGGAAATATTTCACCAACAAAGCCCATCACCTCAACTC
CCACAATGACCCCAGAGAACTCTCAAAACTGGTAGAAAGCAGGGGGTATGTCCTTGGCTTCTGA
CTGTGTGTGCATTGAAAACTGCTCCTGGATCCAAAGGAACCATGAGGGTCACACACACACACAC
ACACACACACACACACACACACACACACACACCAGTTTCCTTGTATGCTCACACAGGTACCGAG
CTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTC

Region

Nucleotide Sequences
GenBank Nucleotide CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat


Additional Information

Database Acc Id Source(s)
UniSTS 119565 UniSTS